Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1060 ATGGCAATGGCGCCCTCAACTCCCACTAGCGGGTCTGGCAAGAAGGTTAGAAAGCCTTATACTATTACCAAGTCTAGGGAGAGCTGGTCCGAGGAAGAGCATGACAAGTTTCTGGAAGCTCTTCAACTATTTGACAGAGAttggaagaaaattgaagattttgttGGTTCAAAAACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAACGGGACAGTGGCACATGTGCCTCCTCCTCGACCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCCAAAAATGTTTTGGTGCCGTTGCCAGCTTCCATGGCTTATGTTTCTTCCACTAGTACCCTTCCACCTGGGTATGCCACATGGGATGAAAATTCCTTGCTCATGAATGCTGGATCCAGCAAATCAGTGCCCTGTCAGGATGAACTCACCAATCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAAATTGGCCACAGCAGTCTTAGTGGTGTTGGGAACTCTAATAGAAAGCTGCCTGCTACCGAGATAACGAAACAAGGGAAACAGGCTCAGGTTCTTCATGATTTTGCTGAAGTTTACAGCTTCATTGGAGGTGCTTTTGATCCAGAGACAAAAGGCCATGTCCAGAAGCTGAAGGAAATGGATcctataaattttgaaactGTTTTGTTGTTAATGAAAAACCTCACTGTCAACTTGTCTAGTCCTGACTTTGAGCCCATTAGGAAGGCCTTGTCATCATACGATGTCAATACCAAGACAGTAGGAGTTACCGCAGGAATTGACGTCAAGAAGCAGACAAATGATCTATCATGTCAAACAGCTTGA 861 0.4274 MAMAPSTPTSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASMAYVSSTSTLPPGYATWDENSLLMNAGSSKSVPCQDELTNLHGNEADIGSKGITQIGHSSLSGVGNSNRKLPATEITKQGKQAQVLHDFAEVYSFIGGAFDPETKGHVQKLKEMDPINFETVLLLMKNLTVNLSSPDFEPIRKALSSYDVNTKTVGVTAGIDVKKQTNDLSCQTA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1060 286 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Ssu4g1060 286 SMART sant 25 73 IPR001005 -
Ssu4g1060 286 MobiDBLite consensus disorder prediction 1 16 - -
Ssu4g1060 286 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Ssu4g1060 286 CDD SANT 28 71 IPR001005 -
Ssu4g1060 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Ssu4g1060 286 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Ssu4g1060 286 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g1060 286 PANTHER PROTEIN REVEILLE 8 3 280 - -
Ssu4g1060 286 Gene3D - 29 76 - -
Ssu4g1060 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Ssu4g1060 286 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Ssu4g1060 286 PANTHER SWI/SNF COMPLEX-RELATED 3 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1060 Ssu-Chr4 16955771 16959633 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g1060 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1060 - - gmx:100783482 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1060 4 16955771 16959633 Ssu7g2358 7 46272775 46278130 PCT