Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1059 ATGGCAGCAGCAGCTCGGCCTCTCGTCTCCGTTCAAACCGTAGAGGGCGATGCGGCCCCCACCATCCCTCTCCCCGACGTCATGAAGGCTTCCATTCGCCCTGACATAGTCACTTTCGTTCACTCCAACATTTCCCGTAACAGCCGCCAGCCATACGCCGTCAGCAAGCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCCCGCATCCCCCGTGTCCCCGGCGGCGGCACCCACCGCGCCGGCCAGGGCGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTTGCCCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTCGTCTCCGCCATCGCCGCCTCCGCGATCCCCTCCCTGGTCCTCGCCTGCGGCCACCGCATCGAGTCCGTGCCGGAACTCCCCCTCGTCGTCGGCGACACCGTGGAAGGCGTCGAGAAAAGCAAGGAAGCGGTGAAAGTTCTGCAGAAAATCGGCGCCTTCCCCGACGCGAAGAAAGCGAAAGAGAGCCACGGCATTCGCGCGGGTAAGGGTAAAATGAGGAACCGCAGGTACATTTCGCGGAAGGGTCCTCTTTTAGTGTACGGAACCGAAGGGGCTAAGGCCGTTAAAGCCTTTAGGAACATTCCGGGTGTTGAGGTGGCAAATGTCGATAGGCTCAACCTTCTGAAGTTGGCACCCGGTGGCCACCTCGGGAGGTTTATTATTTGGACCAAGTCCGCGTTCGAGAAGCTGGACTCCATTTATGGGTCGTTCGATAAGGTTTCTGAGAAGAAAAAGGGCTACCTGCTTCCCAGGCCCAAGGTGGTAAACTCTGACTTGGCCCGGATTATTAACTCCGATGAGGTCCAGTCCGTGGTCAGGCCCATTGAGAAAGAGGTTAAGAGGGCGACTCTGAAGAAGAACCCTCTGAAGAACCTCAATGTGATGTTGAAGCTCAATCCCTATGCTAAGACTGCCAAGAGGATGGCTCTCCTCGCTGAGAAGCAGCGCGTTGTGGCGAAGAAGGAGAAGCTTGATAAGAAGAGCAACATTGTCTCCAAGGAGGAGGCTTCTGCGATTAAGGCTGCTGGAAAAGCATGGTATCAAACCATGGTGTCCGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGCTAGGAGGAGGCTTCTGCGATTAA 1212 0.58 MAAAARPLVSVQTVEGDAAPTIPLPDVMKASIRPDIVTFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLACGHRIESVPELPLVVGDTVEGVEKSKEAVKVLQKIGAFPDAKKAKESHGIRAGKGKMRNRRYISRKGPLLVYGTEGAKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKVSEKKKGYLLPRPKVVNSDLARIINSDEVQSVVRPIEKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEKQRVVAKKEKLDKKSNIVSKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGGGFCD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1059 403 SUPERFAMILY Ribosomal protein L4 8 263 IPR023574 GO:0003735|GO:0005840|GO:0006412
Ssu4g1059 403 PANTHER BNAC03G35890D PROTEIN 2 398 - -
Ssu4g1059 403 MobiDBLite consensus disorder prediction 50 91 - -
Ssu4g1059 403 MobiDBLite consensus disorder prediction 50 69 - -
Ssu4g1059 403 Pfam 60S ribosomal protein L4 C-terminal domain 276 347 IPR025755 -
Ssu4g1059 403 Gene3D - 3 304 IPR023574 GO:0003735|GO:0005840|GO:0006412
Ssu4g1059 403 PANTHER 60S RIBOSOMAL PROTEIN L4 2 398 IPR045240 -
Ssu4g1059 403 Pfam Ribosomal protein L4/L1 family 22 262 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1059 Ssu-Chr4 16951916 16953617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1059 2 399 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 77.861 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1059 K02930 - gmx:100796712 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1059 4 16951916 16953617 Ssu7g2359 7 46280833 46283091 PCT