Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1058 ATGCTGGATCTCAACCTCAATGCCGATTCCGCCTCCGACGACAACACGCCGCCGCTCTCCGCCGCGCAAATGGAGAGCTCCGGCAGCCTCAATTCCTCCGTCGTCAATGCCGCCGACACCGAAGACTCCTGCTCCTACAGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAGCAGCATCTCCGCCGCCGCCGGAGAGTCCTCCGTTCAGACCATCCAGCTCTTTCCGACGGCCGAATCGGGAGCCTCGCCGGGATGGCCGGATCACCGCGGTGCTGCGCCGGAGCAGAGGATCACTCCCCGGCAGCCGCAGGTGAAGAAGAGCCGCCGCGGACCGAGGTCAAGGAGCTCGCAGTATCGCGGCGTCACTTTTTATCGCAGAACGGGAAGATGGGAATCGCACATTTGGGATTGTGGGAAACAAGTGTACTTGGgtGGATTTGACACAGCGCATGCTGCGGCGAGggcGTATGATCGAGCTGCGATCAAGTTCCGTGGAGTTGATGCAGATATCAATTTCAACGTTAGCGATTACGATGAAGATATAAAGCAGATGAGTAATTTCACGAAGGAGGAGTTTGTGCATATTCTGCGTCGGCAGAGCACTGGTTTTTCGAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGCCAGTTTCTTGGGAAAAAGTACATATATCTTGGGCTATTCGACAGCGAACTAGAGGCTGCAAGAGCATATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGTTCATATGAAGGGGAGGTAATATCCCAGTCTGATAATGAAGATAGCAAGCAAAATCTTGATCTTAACTTGGGCATAGCTCCCCCTTCTTATTCGGAAGGTCAAATCAAGAACACACCCAGCAATGGGAGTGGTTTGAAAGTTCCACACGGCTGGGATGATATCCCTGTTGATAAGAGAGTTATGTTTGAGCACTCTGGATCAAGATCACTGAATGTTCAGCCATCTCATGGCTTCTCCATAGCATCTGAGTACCATCCTTCCGTCTGGAGTGGTAGCAATTTCTTCCCCGTCTGCGAGGAAACAGCAATAGAGAAGAGGATGGAagctgctcccatgccaaattgGGCATGGCAAGTCCAACGTCCGTATGGCGGGGCAACTCTTACTCCACCTTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGATAGTCAAATTCATTTTCCAAACATGACATTCCTCCACCCACATTTTCCACCATCAATCACCAACTCCGGCACCATATCCACTTTCTACTGCGGTAGCTGA 1359 0.5085 MLDLNLNADSASDDNTPPLSAAQMESSGSLNSSVVNAADTEDSCSYSDAVAYNFAILNSSISAAAGESSVQTIQLFPTAESGASPGWPDHRGAAPEQRITPRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGEVISQSDNEDSKQNLDLNLGIAPPSYSEGQIKNTPSNGSGLKVPHGWDDIPVDKRVMFEHSGSRSLNVQPSHGFSIASEYHPSVWSGSNFFPVCEETAIEKRMEAAPMPNWAWQVQRPYGGATLTPPFSTAASSGFPSTIIPSAADSQIHFPNMTFLHPHFPPSITNSGTISTFYCGS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1058 452 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 448 - -
Ssu4g1058 452 CDD AP2 210 270 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 SMART rav1_2 119 181 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 SMART rav1_2 211 274 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 448 - -
Ssu4g1058 452 ProSiteProfiles AP2/ERF domain profile. 119 175 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 MobiDBLite consensus disorder prediction 8 27 - -
Ssu4g1058 452 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 Pfam AP2 domain 119 167 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 Pfam AP2 domain 210 260 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 SUPERFAMILY DNA-binding domain 210 269 IPR016177 GO:0003677
Ssu4g1058 452 MobiDBLite consensus disorder prediction 79 120 - -
Ssu4g1058 452 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g1058 452 PRINTS Ethylene responsive element binding protein signature 250 270 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700|GO:0006355
Ssu4g1058 452 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Ssu4g1058 452 Gene3D AP2/ERF domain 210 269 IPR036955 GO:0003700|GO:0006355
Ssu4g1058 452 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1058 Ssu-Chr4 16933502 16935902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1058 99 304 AP2-EREBP Transcription Factor Family AT4G36920 77.512 1.71e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu4g1058 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1058 K09284 - gmx:100808212 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1058 4 16933502 16935902 Ssu4g1058 4 16933502 16935902 ECH