Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1057 ATGGAGAGTACTCTACTCTTCCTCTCCTCTCTCACACTCACACTCTTCCTCACACTCCTTCTCCCTTCGCCTTTTTCCTCTGCTCAGATCATGCAAGGTTTTGTAAGTTTGGACTGTGGAGGTACAGAAAAATTCACTGATGAAATTGGTCTTCACTGGACTCCTGATGATAAGCTTACTTATGGACAAATAAGTACTATATCAGTTGCAAATGAGACACGGAAGCAATACACGACACTGCGACATTTTCCTGCTGATTCGAGGAAATACTGCTACACTCTTGATGTTGTCAGTAGGACGAGGTACCTACTGAGGGCCACCTTCTTGTATGGGAACTTTGACAATAACAATGTTTATCCAAAATTTGACATCTCTGTTGGGGCTACACATTGGTCTACTATTGTTATATCTGATGCTAACGGTATAGAAATGCGAGAGCTAATATTTTTGGCTTCAAGTCCTACAGCGAGTGTATGTTTATCGAATGCAACAACTGGACAGCCATTCATATCTACGCTTGAACTTCGGCAATTCAATGGTTCAGTCTATTATACACAATATGAGGACCAGTTTTACCTCAGTGTCTCTGCAAGGATAAATTTTGGTGCAGAGAGTGATGCTCTAATTAGGTATCCTGATGACCCTTTTGATAGAATTTGGGAGTCTGATTCTGTGAAGAAAGCTAATTATCTTGTCGATGTTGCTGCTGGAACTGAGAAACTTTCTACAAAATTACCAATTGATGTTAACAAAGATGAAATGCCACCAGTGAAAGTGATGCAGACAGCTGTAGTGGGTACAAATGGATCTCTAACTTACCGGTTGAACTTGGATGGTTTTCCTGGTACTGGTTGGGCATTCACCTATTTTGCAGAGATTGAAGATTTGGCGCCCAATGAGTCGAGAAAATTCAGGCTAGTACTTCCAGGCCAGCCTGATATTAGCAAGGCTGTTGTAAATATTGAAGAAAATGCTCAAGGGAAATATCGTCTTTATGAACCAGGGTTTACCAACATATCCCTACCCTTTGTGCTCTCTTTTAGATTTGGCAAGACATATGATTCTTCCAGAGGACCTCTCCTAAATGCCATGGAGATAAATATGTATCTGGAGAAAAATGATGGTTCCTTAGATGGAACAACTATTTCTAGTGTACTTTCACACTACTCTACAGCAGACTGGGCCCAAGAAGGTGGTGATCCATGTCTGCCTGTGCCATGGTCATGGGTCCGATGTAACTCAGATCCACAACCAAGAATAGTTTCAATCTTGTTATCCAATCAAAACTTGACCGGGAATATTCCTTTGGATATCACCAAATTGGTTGGTTTGGTTGAACTATGGCTTGATGGAAATATGTTGACTGGCCCATTCCCAGATTTTACTGGATGCATGGacttaaaaatcatTCATCTTGAAAACAATCAATTGACAGGTGTGCTCCCAACCTCTTTGGGAAACCTTCCAAGTTTGAGGGAACTGTATGTGcaaaataatatgttatctGGAACCATACCATCAGATCTTCTGAGCAAGGATGTGGTTCTGAACTACTCTGGAAATAATAATCTTCACAAAGACAGCAAAGTAAAGGGCCATATGTATGTTATTATTGGTTCATCAGTTGGGGTTTCAGTTCTACTTTTGGCTACTGTTATATCTTGCTTGTTTATGCATAAAGGCAAGGGAAGATATTATGAGCAAGACCGCATTGATGCTCTCCCTACTCAAAGGCTGGCTTCTTGGAAGAGCAATGATCCTGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATaactttgagaaaaatattggtTCTGGTGGTTTTGGAGTTGTATACTATGGAAAACTAAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGCAAGCGAGAGTTCTCCAATGAGGTGACTCTTCTTTCAAGAATACATCACAGAAATTTGGTCCAACTGCTTGGGTATTGTCGAGATGAAGAGAATAGTATGCTTGTTTACGAGTTCATGCATAATGGCACTCTCAAGGAACACCTTTATGGCCCATTAGCACATGGACGGAGTATCAATTGGATTAAGCGCCTTGAGATTGCAGAAGATGCTGCCAAAGGGATTGAATATCTTCATACGGGTTGTGTTCCTGTCGTTATCCATAGAGACTTAAAAAGCAGCAATATTCTTCTCGACAAGCACATGAGAGCCAAGGTTTCAgattttggtctttcaaaacTTGCTGTTGATGGAGTCTCCCATGTTTCAAGCATAGTTCGGGGGACAGTAGGATATCTGGATCCTGAGTACTATATTTCCCAGCAGCTGACTGACAAGAGTGATGTTTATAGTTTTGGCGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCGATATCGAATGAAAGCTTTGGTGTAAATTGCCGAAACATAGTCCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGTATTATCGATCCCTTGCTGCGGAATGACTATGATCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCCCATGGACATATGCGGCCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCAATATCTATTGAGAGACAGGCAGAAGCATTAAGAGAGGGCAATTCAGATGAGATGTCAAGAAATTCTTTTCATTCTTCCATGAACATGGGTTCAATGGATCTGGGTGGAGCTGAGAGTTACCTGTCAATTGATGAATCAATTGCACAGCCTACAGCAAGATAG 2799 0.4001 MESTLLFLSSLTLTLFLTLLLPSPFSSAQIMQGFVSLDCGGTEKFTDEIGLHWTPDDKLTYGQISTISVANETRKQYTTLRHFPADSRKYCYTLDVVSRTRYLLRATFLYGNFDNNNVYPKFDISVGATHWSTIVISDANGIEMRELIFLASSPTASVCLSNATTGQPFISTLELRQFNGSVYYTQYEDQFYLSVSARINFGAESDALIRYPDDPFDRIWESDSVKKANYLVDVAAGTEKLSTKLPIDVNKDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGTGWAFTYFAEIEDLAPNESRKFRLVLPGQPDISKAVVNIEENAQGKYRLYEPGFTNISLPFVLSFRFGKTYDSSRGPLLNAMEINMYLEKNDGSLDGTTISSVLSHYSTADWAQEGGDPCLPVPWSWVRCNSDPQPRIVSILLSNQNLTGNIPLDITKLVGLVELWLDGNMLTGPFPDFTGCMDLKIIHLENNQLTGVLPTSLGNLPSLRELYVQNNMLSGTIPSDLLSKDVVLNYSGNNNLHKDSKVKGHMYVIIGSSVGVSVLLLATVISCLFMHKGKGRYYEQDRIDALPTQRLASWKSNDPAEAAHCFSFSEIENATNNFEKNIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCRDEENSMLVYEFMHNGTLKEHLYGPLAHGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGVNCRNIVQWAKLHIESGDIQGIIDPLLRNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAEALREGNSDEMSRNSFHSSMNMGSMDLGGAESYLSIDESIAQPTAR 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1057 932 ProSiteProfiles Protein kinase domain profile. 604 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1057 932 SMART serkin_6 604 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1057 932 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
Ssu4g1057 932 SUPERFAMILY L domain-like 405 526 - -
Ssu4g1057 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672|GO:0006468
Ssu4g1057 932 Pfam Leucine rich repeat 461 501 IPR001611 GO:0005515
Ssu4g1057 932 Pfam Protein tyrosine and serine/threonine kinase 606 806 IPR001245 GO:0004672|GO:0006468
Ssu4g1057 932 Gene3D Phosphorylase Kinase; domain 1 580 679 - -
Ssu4g1057 932 CDD STKc_IRAK 610 877 - -
Ssu4g1057 932 PANTHER OS07G0107800 PROTEIN-RELATED 18 932 - -
Ssu4g1057 932 SUPERFAMILY Protein kinase-like (PK-like) 588 874 IPR011009 -
Ssu4g1057 932 PANTHER TYROSINE KINASE DOMAIN PROTEIN 18 932 - -
Ssu4g1057 932 Gene3D Ribonuclease Inhibitor 380 533 IPR032675 -
Ssu4g1057 932 Pfam Malectin-like domain 37 366 IPR024788 -
Ssu4g1057 932 MobiDBLite consensus disorder prediction 888 907 - -
Ssu4g1057 932 Gene3D Transferase(Phosphotransferase) domain 1 680 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1057 Ssu-Chr4 16853703 16861023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1057 26 714 Receptor kinase-like Gene Family AT2G37050 70.402 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Ssu4g1057 Malectin_like 5e-77 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1057 - - gmx:100784017 1750.33