Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1056 ATGGCGGAGGGTCCGGCGAGCCCCGGTGGCGGCAGCCACGAGAGCGGCGAGCACAGCCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTTCCCATCGCCAACATAAGCCGCATCATGAAGAAGGCGCTACCTGCGAACGGTAAAATCGCGAAGGACGCCAAAGAGACCGTCCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGtcagagagagaagagaaaaaccatTAACGGCGATGATTTGCTCTGGGCAATGGCCACTCTTGGTTTCGAGGATTATATTGATCCCCTTAAGATTTACCTCACCAGATACAGAgagGGTGATACCAAGGGCTCGGCCAAAGGTGGAGACGCATCTGCTAGGAGAGATGTTCAACCAAGTCCTAATGCTCAGCTTGTTCATCAAGGTTCTTTCTCACAGAGTGTTAGTTACACGAATTCGCAGGGTCAACACATGATGGTTCCAATGCAAGGCCCAGAGTAG 510 0.5137 MAEGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDASARRDVQPSPNAQLVHQGSFSQSVSYTNSQGQHMMVPMQGPE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1056 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu4g1056 169 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982
Ssu4g1056 169 MobiDBLite consensus disorder prediction 117 169 - -
Ssu4g1056 169 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu4g1056 169 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Ssu4g1056 169 Gene3D Histone, subunit A 16 155 IPR009072 GO:0046982
Ssu4g1056 169 MobiDBLite consensus disorder prediction 133 162 - -
Ssu4g1056 169 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Ssu4g1056 169 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Ssu4g1056 169 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Ssu4g1056 169 MobiDBLite consensus disorder prediction 1 28 - -
Ssu4g1056 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1056 Ssu-Chr4 16834119 16839278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1056 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.706 9.24e-85 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu4g1056 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1056 K08065 - gmx:100820170 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1056 4 16834119 16839278 Ssu7g2362 7 46344299 46345347 PCT