Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1055 atgagtgCTGCTCTCTTGTCtcgttttgatttaattttcatactgCTGGACAAACCTGATGAATTTCTGGACAAGCGACTCTCGGAGCACATTATGGCACTTCATGCTGGGAATGGACAACATTCACCGGCATTAAGAAAGCGACGTGGAGATCCATCTGATTCTAGAGCTGCTGTATCACAGAATGCTGAAGGTGTAGATCTGGGCGTTAGATCTGGATCTTTAATTTCAAGGTTGAGACTTGACCCAGTAAGAGACAGTGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGgATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGACGGTACTCCTATCACAGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGCCCAGGATGCAACGGATGTGGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAAGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCTTTGAAAGTTCCTGATATTGACACTTTCATCGATAATTTAAACAGCGTTGGTTATCTACTCAAAAAAGGACCGAAGACATACCAGGTGTTATCCTCTTCTTACGCACGAAGCCAACCGTTTAGGATGAGGGGCTAA 843 0.4199 MSAALLSRFDLIFILLDKPDEFLDKRLSEHIMALHAGNGQHSPALRKRRGDPSDSRAAVSQNAEGVDLGVRSGSLISRLRLDPVRDSDFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITAQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYARSQPFRMRG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1055 280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
Ssu4g1055 280 Pfam MCM P-loop domain 1 35 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1055 280 Pfam MCM AAA-lid domain 96 179 IPR041562 -
Ssu4g1055 280 MobiDBLite consensus disorder prediction 38 62 - -
Ssu4g1055 280 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 1 274 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu4g1055 280 Gene3D - 1 185 IPR027417 -
Ssu4g1055 280 PANTHER DNA HELICASE MCM8 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1055 Ssu-Chr4 16825516 16829681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1055 1 266 Core DNA Replication Machinery Family AT3G09660 75.188 5.09e-139 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1055 K10737 - gmx:100784549 497.664