Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1054 ATGGAAATTGGCAGTTTGGTTTTTACCCAAAAAGAAGCATTCTCGCCAAAAGCAGTGGAGGAAGAAAAGGGCAGCGAAGGACGTCGTCGGAAACGGGATGCACGGAACACCAGAAGAGACGGAGCAGAGGATCGGGTACGGTTTCGGATCCGGATCCATGGACCCATTCGGGTGAAAAATGATCATGGAAACTATGTCTTGTCACTTGACTTTCAGCAGTTCAAACAAATATGCCATGTCAAGGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTACCGTTCATAAGGTTTTGCTTTCTAAATGGGAGAATGACAATCTAGAGCTTGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTGAAACTATGATTGCACTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAAACAATTACACGTATATTTCCTGATGGAAAATATTCTCCACCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGCGATCTACTGCTCAAACtattgattttcaaaaaataagAGTTCAAGAATTATTAAAACCTGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGTGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAATCAAAGAACAGAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATccataaaaaattcaaagtcaCAGTCCATACCTGAGGATCTGCAAAACTCTAATCCCAAAGCTAGACCAACTGAGCTGTttgatttgttttcattttcttcaaagGATTTAGAATTTGTTGTGAAGTTTGCGCAGGAGCACAGTTCAGATTTATTTCGGCAAATCCTTCAGTCTATATGCCCATCCATCTATGGTCATGAGCTTGTTAAAgCTGGGATAACTCTGGCATTATTTGGTGGTGTTCGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGAGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCAGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCAGAGCATCAGGCTTTACTGGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCCGTTGGTGGTCATTataagtaa 1524 0.4055 MEIGSLVFTQKEAFSPKAVEEEKGSEGRRRKRDARNTRRDGAEDRVRFRIRIHGPIRVKNDHGNYVLSLDFQQFKQICHVKEFYEMLMEKPKIALLCMSATVHKVLLSKWENDNLELGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQTITRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSIPEDLQNSNPKARPTELFDLFSFSSKDLEFVVKFAQEHSSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1054 507 SMART mcm 131 507 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 MobiDBLite consensus disorder prediction 15 40 - -
Ssu4g1054 507 Pfam MCM OB domain 135 263 IPR033762 -
Ssu4g1054 507 Gene3D - 135 264 IPR012340 -
Ssu4g1054 507 Gene3D - 319 507 IPR027417 -
Ssu4g1054 507 Pfam MCM P-loop domain 337 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 MobiDBLite consensus disorder prediction 14 40 - -
Ssu4g1054 507 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 506 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 Gene3D - 162 212 - -
Ssu4g1054 507 SUPERFAMILY Nucleic acid-binding proteins 63 265 IPR012340 -
Ssu4g1054 507 PANTHER DNA HELICASE MCM8 62 506 - -
Ssu4g1054 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 501 IPR027417 -
Ssu4g1054 507 Coils Coil 456 476 - -
Ssu4g1054 507 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 PRINTS Mini-chromosome maintenance (MCM) protein family signature 495 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 PRINTS Mini-chromosome maintenance (MCM) protein family signature 471 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu4g1054 507 ProSiteProfiles MCM family domain profile. 341 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1054 Ssu-Chr4 16815230 16824913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1054 63 506 Core DNA Replication Machinery Family AT3G09660 73.423 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1054 K10737 - gmx:100784549 856.67