Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1051 ATGGGAGCTGCCCGCAAGCTGAAGTCGCACCGTAGGAGACAAAGGTGGGCTGACAAGGCATACAAAAAGTCTCATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCTCATGCAAAGGGCATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTTGTGCCAAATGACGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAAGGTCATGCCGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAAGTTTCTGGTGTCTCTCTCCTTGCCCTTTTCaaggagaagaaggagaagCCGAGGTCTTAA 411 0.4331 MGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1051 136 MobiDBLite consensus disorder prediction 1 19 - -
Ssu4g1051 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu4g1051 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu4g1051 136 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1051 136 Pfam Ribosomal protein S12/S23 25 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu4g1051 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
Ssu4g1051 136 TIGRFAM uS12_E_A: ribosomal protein uS12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Ssu4g1051 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Ssu4g1051 136 Gene3D - 19 136 IPR012340 -
Ssu4g1051 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Ssu4g1051 136 PANTHER 40S RIBOSOMAL PROTEIN S23 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1051 Ssu-Chr4 16792036 16792660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1051 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.588 1.50e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1051 K02973 - rcu:8263368 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1051 4 16792036 16792660 Ssu4g1051 4 16792036 16792660 ECH
Ssu4g1051 4 16792036 16792660 Ssu3g2551 3 78187483 78187821 ECH