Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1047 ATGGGGAGGAAAGGAAATTGGTTTTCTAGCGTGAAGAAAGCTCTCAGCCCAGactcaaaggagaagaaagatcAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGTCTCATGCTCAGAAACTGATAAAACACCACCACCTATTCCTCCACCAGAAGAGATTAAAATAActgatattgaaaatgaaatcaGTCATGATCACGATCATGTTGTTGAAGTTGCACCTGCCATGGATGCTGAGGAACCTGTTCCTCCTGTTCAGATAGAACCTGTTAGGGTTGAAGCTGCCCCAATTGCTCGTTTTGCCGGTAAACCAAAGGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTCGGGGACACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCGGTTGTAAAACGCCAAGCCACAAGTACCCTCCGCTCTATGCAGACATTGTCTCGCTTGCAGTCTCAGATTCATTCCAGGAGGATCAGAATGTTAGAGGAGAATCAAGCTCTGCAGAGACAGCTCTTACAGAAGCATGCAAGAGAGCTTGAGACCTTGCGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATcagcAAAACTGGAAGAACTCATCTAGATCTGTAAATCCAATGTTCATGGATCCAACCAATCCTACTTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCCGGCCTTGCGAGAGCCATAGCCAGATGGATAAAGAGTTGAATGACCATTCATCTGTAAAAAGCTCAAGCCGCAGCATTATTGGTGGAGAAATCAGCAAGTCATTTGCTCGCTTCCAGCTCAATTCTGAAAAGCACTCTCCAACAGCCAGCCACAATCCTGGCTCACCTAGCTTTCAGTCCACTCCTTCCAAGCCAACTTCAGCATCTGCTAAGAAACCAAAGAAGGCAAGCCCAAGGGGCAGCTGGGTTACCGACGAGGACTCGAAAAGCTTGGTCAGTGTACAGTCAGACCGGTTCCGGAGGCACTCCATTGCTGGTTCATCGGTGAGAGATGACGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAGAGTCCATTAGCCCCAGAAAATGCAAAAACAGAGAAAGGATCCGTTGGGACTGCAAAGAAGCGGCTTTCTTTCCCAGCTTCACCTGCCAGACCAAGGCGCCATTCAGGTCCACCAAAGGTAGAAAGCAGCTTAAATGCAGAGTTAGCTGTGGACAATGGTGTGGCCAGTTGA 1416 0.4619 MGRKGNWFSSVKKALSPDSKEKKDQKSSKSKKKWFGKQKLQTSVSCSETDKTPPPIPPPEEIKITDIENEISHDHDHVVEVAPAMDAEEPVPPVQIEPVRVEAAPIARFAGKPKDEVAAIKIQTAFRGHLARRALRALRGLVRLKLLMEGPVVKRQATSTLRSMQTLSRLQSQIHSRRIRMLEENQALQRQLLQKHARELETLRMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSVNPMFMDPTNPTWGWSWLERWMAARPCESHSQMDKELNDHSSVKSSSRSIIGGEISKSFARFQLNSEKHSPTASHNPGSPSFQSTPSKPTSASAKKPKKASPRGSWVTDEDSKSLVSVQSDRFRRHSIAGSSVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLAPENAKTEKGSVGTAKKRLSFPASPARPRRHSGPPKVESSLNAELAVDNGVAS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1047 471 MobiDBLite consensus disorder prediction 319 347 - -
Ssu4g1047 471 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Ssu4g1047 471 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Ssu4g1047 471 PANTHER IQ-DOMAIN 5-RELATED 1 467 - -
Ssu4g1047 471 SMART iq_5 114 136 IPR000048 GO:0005515
Ssu4g1047 471 Gene3D - 61 143 - -
Ssu4g1047 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 467 - -
Ssu4g1047 471 MobiDBLite consensus disorder prediction 1 59 - -
Ssu4g1047 471 MobiDBLite consensus disorder prediction 398 422 - -
Ssu4g1047 471 MobiDBLite consensus disorder prediction 319 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1047 Ssu-Chr4 16769127 16772276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1047 1 471 IQD Protein Family AT5G03040 53.320 6.92e-154 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1047 - - gmx:100800080 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1047 4 16769127 16772276 Ssu4g1047 4 16769127 16772276 ECH
Ssu4g1047 4 16769127 16772276 Ssu7g2379 7 46524623 46526965 PCT