Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1044 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAGTTCGGCGCCGATATTGCCAGGTTTCAGgaaaaagatagcGATACTGATTCGGCGAAGATTTGGAGCGCCGCTGAAGACGAAAGCGAGAAAACAAAAGAAGCAGTGGAAGAGAGAGCAGCGTCTACGAAGAAGAGGAAGCGCAAGGGAACCTCTTCCGCAACGGTTGAAGGATTCAGTGTGTTCAGAGATTCGACATCGGTGGCGCAGTCCAGTGAGGAAGCTCGAGCTGATGAGGAGTCCGTTGAGctgaataataagaagaaggaGCAAAATAAGCAACTCGAGCGGGACGCTATATTCAGAAAGAAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCAAGATATAACTGTCCGTCGTATTTGTTGCGCAATCTGAAAGAGCTTGGATTCAGAGAACCAACACCTATCCAAAGGCAGGCTATTCCAGtaattttacatGGTCGGGAATGCTTTGCTTGTGCACCAACCGGCTCTGGGAAAACCCTTGCGTTTGTGTGTCCAATGCTTATGAAGCTTCAGGTATTACTTATTTTCTCCAACTGTTTTTGCAGTTCCCAACGTCCCTTGTCCTTGGTTTCTATAATCAACTATGATTTACAGGATCCAGAAAAGGATGGCGTTCGAGCCGTTATCCTTTGTCCTACCCGTGAATTATCTGCTCAAACATATCGAGAGTGCAAAAAgctttctaaaagaaaaaaatttcgtaTCAAGTTAATGACTAAACATCTTGCAAGAAATGCTGAATTTTCAAAGTTTCCATGCGATATACTAATATCCACACCACTCCGATTACAATTGGCTATCAAGAGGAAGAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGACGAATCAGATAAGCTATTTGAGCCCGAATTATTCAAACAGATTGATTCTGTCATCAAGGCATGCTCAAATCCCTCAATAATACGCTCCCTGTTCAGTGCTACTTTACCCGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCACGATGCTGTTCGTGTAATTGTTGGTAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAAATTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGAGCCAAGGATCTATACAGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACGTGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCTGCATATGTCCACAGAATTGgtcGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTAAAGAATGTTGCTAATCTTATGGCAGCGTCGGGCTGTGAGGTTCCATCATGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAAACACCGGCCCAAAAGAGATTCAATCTCAACAAAACCAGACCTATAA 1683 0.4189 MANDSSFLFAGIRFDRKKFGADIARFQEKDSDTDSAKIWSAAEDESEKTKEAVEERAASTKKRKRKGTSSATVEGFSVFRDSTSVAQSSEEARADEESVELNNKKKEQNKQLERDAIFRKKHNIHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFREPTPIQRQAIPVILHGRECFACAPTGSGKTLAFVCPMLMKLQVLLIFSNCFCSSQRPLSLVSIINYDLQDPEKDGVRAVILCPTRELSAQTYRECKKLSKRKKFRIKLMTKHLARNAEFSKFPCDILISTPLRLQLAIKRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKILAIRQSFAESLNPPVLVFLQSKERAKDLYSELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEEDIPFLKNVANLMAASGCEVPSWLMELRKKKWKKHRPKRDSISTKPDL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1044 560 CDD SF2_C_DEAD 380 510 - -
Ssu4g1044 560 Pfam Helicase conserved C-terminal domain 396 501 IPR001650 -
Ssu4g1044 560 SMART ultradead3 159 383 IPR014001 -
Ssu4g1044 560 MobiDBLite consensus disorder prediction 26 61 - -
Ssu4g1044 560 Gene3D - 368 545 IPR027417 -
Ssu4g1044 560 MobiDBLite consensus disorder prediction 87 111 - -
Ssu4g1044 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Ssu4g1044 560 Gene3D - 80 367 IPR027417 -
Ssu4g1044 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 368 IPR014001 -
Ssu4g1044 560 Coils Coil 43 63 - -
Ssu4g1044 560 Pfam DEAD/DEAH box helicase 164 355 IPR011545 GO:0003676|GO:0005524
Ssu4g1044 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 540 IPR001650 -
Ssu4g1044 560 CDD DEADc_DDX52 151 371 IPR044764 GO:0003724|GO:0005524|GO:0030490
Ssu4g1044 560 MobiDBLite consensus disorder prediction 90 111 - -
Ssu4g1044 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 208 557 - -
Ssu4g1044 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 203 - -
Ssu4g1044 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 519 IPR027417 -
Ssu4g1044 560 Coils Coil 89 111 - -
Ssu4g1044 560 MobiDBLite consensus disorder prediction 26 72 - -
Ssu4g1044 560 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 208 557 - -
Ssu4g1044 560 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 203 - -
Ssu4g1044 560 SMART helicmild6 420 501 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1044 Ssu-Chr4 16722396 16726814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1044 134 539 Eukaryotic Initiation Factors Gene Family AT3G19760 30.147 1.58e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1044 K14779 - gmx:100800969 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1044 4 16722396 16726814 Ssu4g1044 4 16722396 16726814 ECH