Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1036 atgtcaatttttttttttcttccttgtgTTTATTTCTTTCCGTCCTCTTTGTTTTCTTGCCTCAGACTAGAAGGTGCTCTTTCTGTATCAGTGGATAGAGGCATGGGTAAATGGCTTCAAGTCGTGAATTATTTGCAGATCAGAATCAACTACACTATCTATTTTGACACCCAGAGATTGCAAGTGACAGTTATGGGGCATAGGCACTTATATAACACATCTCCATTGTTTGAGGGTGAGCCTGACCAGAACTGGAGTCATATGCATACTGATCAACATTATGTGCACCTTGGTAGGACTAGCACTTCAGAGAATGGTTCCTTTATTTATCCTGCAGAAAATATGTCTATAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGGTCAAATGGATATGCATCCTCAAGTCACAACATTGATGTACCTCCTCACCAATCAGATGCATCAGGCTCTTCTAGTGATCATTTTGTGCATTCGTCTAGTGCTGGGGCATTCTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTTCTTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCCTCACAAGCGTAAGAGCCCTGGAATTCCTCCAGTCTATGAGAGAGGCAGTACAAGTAGATACTTTAATGCTGGGAGTTCAACTGATCTTCCTACATCTTCAGAATTGTGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATAAGGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGATTCCAACCAGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCATGGTGGATCTTTCTGGTCAGACTTCTGCTACATTGACAAGGGATTGGAGCCAAATGAACATGTCTCCAGCTAATGGAAGGGTGTTATTGTCAGATACAAGTACTTTTGGTCTTGAGACAAGTCACTTCCTTGTTGGAACTGGTGCTACTGCTAGCAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTACCCCTcctcaaagttttcaaaataatcaaactcAGACTGCTAGGGGAATTCGAAGCAACTATTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTTTGGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGGGCATCGCTATATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGAGTGTCTGATGATTTGTTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGTGTAATATGTCTGgAAGAGTACAAGAACATGGACGATGTTGGAACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCGTTAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGCATCTGCTTTGCCTGAGGATACGGAGGATAAATAA 1845 0.4136 MSIFFFLPCVYFFPSSLFSCLRLEGALSVSVDRGMGKWLQVVNYLQIRINYTIYFDTQRLQVTVMGHRHLYNTSPLFEGEPDQNWSHMHTDQHYVHLGRTSTSENGSFIYPAENMSIDSISFPSHWNSSTRSNGYASSSHNIDVPPHQSDASGSSSDHFVHSSSAGAFFAVSENYVHQPSSSNYDRQTFHVDGGFIDLTMGSGQGPHKRKSPGIPPVYERGSTSRYFNAGSSTDLPTSSELWQEKPNIDSQYMPWDHFTMTPTFRGTGLSIRGEGSLRNVRSRSALDLDSNQARTHLSSNHSHNSYPTVPPVDHSSMVDLSGQTSATLTRDWSQMNMSPANGRVLLSDTSTFGLETSHFLVGTGATASNASVDVGGFHHEFGTSRNPTPPQSFQNNQTQTARGIRSNYSQRSTPTFRASSSLRLGHVTSLDDGLPMVAESYSSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFSSEGFMVVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGYVNTGVSDDLFSKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCVKKWLSMKKLCPICKASALPEDTEDK 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1036 614 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 65 610 IPR045191 GO:0061630
Ssu4g1036 614 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 65 610 - -
Ssu4g1036 614 SMART ring_2 561 602 IPR001841 -
Ssu4g1036 614 MobiDBLite consensus disorder prediction 133 157 - -
Ssu4g1036 614 MobiDBLite consensus disorder prediction 384 417 - -
Ssu4g1036 614 MobiDBLite consensus disorder prediction 200 220 - -
Ssu4g1036 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 607 IPR013083 -
Ssu4g1036 614 SUPERFAMILY RING/U-box 551 607 - -
Ssu4g1036 614 MobiDBLite consensus disorder prediction 382 417 - -
Ssu4g1036 614 ProSiteProfiles Zinc finger RING-type profile. 561 603 IPR001841 -
Ssu4g1036 614 Pfam Ring finger domain 560 603 IPR001841 -
Ssu4g1036 614 CDD RING-H2_TTC3 560 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1036 Ssu-Chr4 16639354 16643632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1036 65 613 C3H Transcription Factor Family AT2G37150 44.065 4.32e-123 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1036 - - gmx:100803627 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1036 4 16639354 16643632 Ssu4g1036 4 16639354 16643632 ECH