Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1034 ATGAGTGTCATCGACATTCTCACCAGAGTTGATTCCATTTGTAAAAAGTACGACAAATACGACGTCGAAAAGCAAAGGGACTCCAATCTCTCCGGCGATGATGCATTCGCCAAACTCTATGCTACCGTCGACGCCGACATCGAGGCCTTACTTCAGAAAGCAGAAACCGCTTCGAAGGAGAAAAGTAAGGCATCTACTGTAGCGATCAATGCCGAGATTCGTCGTACCAAGGCTAGGTTGTTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTATGAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGACAGGATTCAAGCTATCCCAGATGGGACCCCTGCAGCACCCAAACAAACTGGAGGTTGGGCAGCTTCAGCCTCGCGGCCTGGAATTAAATTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAACTGAAGAATCAAGTCAATTCAGGCAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGATACTAAGGTGGACAAGGCATCTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGACACAGTGAACCAGGTTTTTTTAACTGCAACTCTTTGTCTTAGATTTTCAACAATTTCCAGTTGCATCAGTGATAGATTTTATGTTGAATCTTATGTGATTATTGGTTCTCATCCAGCTTCGATCGAGTCGAAACTTTTGTATTGA 837 0.4277 MSVIDILTRVDSICKKYDKYDVEKQRDSNLSGDDAFAKLYATVDADIEALLQKAETASKEKSKASTVAINAEIRRTKARLLEEVPKLQRLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAAPKQTGGWAASASRPGIKFDSDGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLRDTVNQVFLTATLCLRFSTISSCISDRFYVESYVIIGSHPASIESKLLY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1034 278 SUPERFAMILY SNARE fusion complex 163 230 - -
Ssu4g1034 278 CDD SNARE_Qc 175 230 - -
Ssu4g1034 278 Gene3D - 170 231 - -
Ssu4g1034 278 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Ssu4g1034 278 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu4g1034 278 PANTHER SYNTAXIN 1 235 IPR045242 -
Ssu4g1034 278 MobiDBLite consensus disorder prediction 122 142 - -
Ssu4g1034 278 PANTHER SYNTAXIN-73 1 235 - -
Ssu4g1034 278 SMART tSNARE_6 165 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1034 Ssu-Chr4 16604622 16606736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1034 1 244 SNARE and Associated Proteins AT3G09740 73.984 5.29e-136 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1034 K08506 - gmx:100804155 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1034 4 16604622 16606736 Ssu4g1034 4 16604622 16606736 ECH