Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1033 ATGAGGCCTTCACTTCGCTGCAAGAAAATGCTACATACGAAAGTTGGATCAGGCTCGTGCCACTCGTCTTGTACACGAGTTGTTACTCCGGAGGCATCATACCTATTCATGTTCATGGACAAAGTTCCTAATTCAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCCTCTGATGAGGAGCTAATTGTTCACTATCTGAGAAACCAAGTGACATCATCACCCCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTCTGGGGAGGATGAATGGTATTTCTTTACTCCTAGGGACAGGAAGTATCCCAATGGAGTGAGGCCCAATAGAGCAGCTGCTTCTGGTTATTGGAAGGCTACTGGGACTgacaaacccattttcacttCCTGTGGGAGGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAGGGGTCGTCCACCAAAGGGATCAAAAACCGACTGGATCATGCATGAGTATAGGTTGCATGATTCCATGGTCTCCAATTCAAAGCAAAAAGGGTCCATGAGACTGGATAAGTGGGTGCTGTGCCGGGTTAGACAAAAGACTAGCAACCCAAGTAGCATTTGGGAAGACTCAACTGAACTTATTTATGAACCAACAAACCACTTTCAACAAATGAATGAGAACTCAAATCCTGAACCAGTCAAAAACTCTGTGCATGATGAATATCCTATGTTACCTTATATTCTTGCTTTTAAGAGTGCTCTGCCTAATTCTATTGGCATGGCCTCAAGCTCGGGCTTTGGTTGTAATGATGACGTAAAAGCATATGCTTCACTGCATGATGACAACTTGAATATAATAACAGGAGCGCAGTTCATGGCACCTGTAGCTGAGGGCTTGTTTAATCCGCTGAAGAGAAAAAACATTGAAGAAAATGAGTTGGACTTTTATGCTCCCCTCAATAAAAAACTAAGTGAAGAAGTTGATGTTGGGAAACAAAGacttgagaaaaatataaacaaaggcTACGATTTCAATAACTTTGACCAGTGGACTTCCATCATACAACCCCAAGAGCTTAATAGCTTAGCCTTTACGAAATATACATGA 1119 0.412 MRPSLRCKKMLHTKVGSGSCHSSCTRVVTPEASYLFMFMDKVPNSEIQLPPGFRFHPSDEELIVHYLRNQVTSSPLPASFIAEIDLYKYNPWELPSKALSGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGRKSIGVKKALVFYRGRPPKGSKTDWIMHEYRLHDSMVSNSKQKGSMRLDKWVLCRVRQKTSNPSSIWEDSTELIYEPTNHFQQMNENSNPEPVKNSVHDEYPMLPYILAFKSALPNSIGMASSSGFGCNDDVKAYASLHDDNLNIITGAQFMAPVAEGLFNPLKRKNIEENELDFYAPLNKKLSEEVDVGKQRLEKNINKGYDFNNFDQWTSIIQPQELNSLAFTKYT 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1033 372 Gene3D NAC domain 58 207 IPR036093 GO:0003677|GO:0006355
Ssu4g1033 372 SUPERFAMILY NAC domain 39 203 IPR036093 GO:0003677|GO:0006355
Ssu4g1033 372 ProSiteProfiles NAC domain profile. 49 203 IPR003441 GO:0003677|GO:0006355
Ssu4g1033 372 PANTHER NAC TRANSCRIPTION FACTOR 56 40 334 - -
Ssu4g1033 372 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 40 334 - -
Ssu4g1033 372 Pfam No apical meristem (NAM) protein 50 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1033 Ssu-Chr4 16596985 16599456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1033 44 203 NAC Transcription Factor Family AT1G69490 70.000 1.21e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g1033 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1033 - - gmx:100788799 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1033 4 16596985 16599456 Ssu4g1033 4 16596985 16599456 ECH