Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1032 ATGCAAATGATACCCGGCGACCCCTTTTCACTATCCACTTCCCTTGGAGGTCTTGCCAACGAacaaaacacaaacacaaacccTAACCCTAATCCCCCTCCAGCCACCAAGAAGAAGAGAAATCTACCAGGAACACCagATCCAGATGCGGAGGTCATTGCTCTTTCGCCAAAGACTCTCATGGCCACGAACCGTTTCATCTGCGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCGTGGAAGCTGCGACAGAGGTCAAACAAGGAGGTTCGCAAGAAGGTATATATCTGTCCGGAGAAGACGTGCGTCCACCACGACGCCGCCAGGGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAAAAATACGCAGTCCAATCTGATTGGAAAGCCCACACCAAAACCTGTGGCACCAGAGAATATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCTTTCTGTGATGCCTTAGCTGAAGAGAGTTCGAGACTCACCTCAGCTGCTACAACTAGCCTAAATTTTAAGAGCGAAGATGCAACTGTGATGAGCACGCAGGGTGGTTTGTCGTCACGTGGATTAATAACTGGTCAGGGAATGCAAAGTGTTCCACAATTTGGTCCACATGGGTTTCGTTTAATGGGGATGAGTACAGACCAGCAAAGACCAAACTTGCCACTGTGGTTGAACCAGGGAAATCACCCCGTTAACAATCCACTCGACGTGGCATCTTCAAGTTCTTCAGGTTTGCCTGAGATAGTGCAAATGGCACAAGCTAATAATGCCTTAATTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCCTACTTCTTCCAATTCTTCTAATCCAAACCTTTCCCTACCGCCACTAATGGGGAAAACGGGAGAAGGTGGAGCTTCAGATTTGGCATCCATTTATTCTGAGAGTCAAAACAAGAATTCAAACTCAGCTTCTCCAATGTCAGCCACTGCTCTTTTGCAGAAGGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTAATGAGCTCATCTTCCACCCAAACTACTAGTCTCAGTAGCAATGCAAACCAAAGCTGTGAACAACTTAACCAAGCCTTTCAGAACATGAAACAGCATGAGAATTTTAATGCAACCAGCAGTAGTGCAACTATGTTTGGTAGTTCTACTAACTTTAGCTCATTGACGCATTCATCAAACAGTTTTGATCAGTTTCTGATGCAAAACAATATGGAACCAAGTGAGGTGGCGCAGTTGAAGCTCCACCCTGGCTCAAACACAGTGGAACGTAATTTGACAAGAGATTTTCTTGGCATgggtggaggaggaggtggacATCCATTCCTACCCCAAGAGCTGGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1554 0.4517 MQMIPGDPFSLSTSLGGLANEQNTNTNPNPNPPPATKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLTSAATTSLNFKSEDATVMSTQGGLSSRGLITGQGMQSVPQFGPHGFRLMGMSTDQQRPNLPLWLNQGNHPVNNPLDVASSSSSGLPEIVQMAQANNALIGSSSIFSNFGMPTSSNSSNPNLSLPPLMGKTGEGGASDLASIYSESQNKNSNSASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQTTSLSSNANQSCEQLNQAFQNMKQHENFNATSSSATMFGSSTNFSSLTHSSNSFDQFLMQNNMEPSEVAQLKLHPGSNTVERNLTRDFLGMGGGGGGHPFLPQELAKFASLGSSMGLNQFTAGHQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1032 517 MobiDBLite consensus disorder prediction 310 324 - -
Ssu4g1032 517 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Ssu4g1032 517 Gene3D Classic Zinc Finger 128 204 - -
Ssu4g1032 517 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Ssu4g1032 517 PANTHER ZINC FINGER PROTEIN JACKDAW 7 504 IPR033243 GO:0003700
Ssu4g1032 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Ssu4g1032 517 SMART c2h2final6 142 162 IPR013087 -
Ssu4g1032 517 SMART c2h2final6 66 88 IPR013087 -
Ssu4g1032 517 SMART c2h2final6 107 137 IPR013087 -
Ssu4g1032 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 504 - -
Ssu4g1032 517 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g1032 517 MobiDBLite consensus disorder prediction 310 337 - -
Ssu4g1032 517 MobiDBLite consensus disorder prediction 1 49 - -
Ssu4g1032 517 Gene3D Classic Zinc Finger 44 121 - -
Ssu4g1032 517 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1032 Ssu-Chr4 16574906 16577056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1032 1 504 IDZ Gene Family AT5G03150 48.282 2.11e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1032 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1032 K25870 - gmx:100812495 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1032 4 16574906 16577056 Ssu4g1032 4 16574906 16577056 ECH