Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1031 ATGCTTAATGCTATGGGTTTCTCGTTGTTGACCATGGATTCGGTGGCGTGCAGGGGATTGCTCTACACATTCTTCATTctcaattttgttttggtctgCCAACTCATTCTCCTTCAACCTCTCGTTTCTGCTTCGGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGCGGGCATCACAAAGCATAAAAGTGAAACATTATACCGACGCACTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAAACCTTTCGGAAGCATACCTATTCAGAGCCTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAAATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCTCAAAATCTTtggaatatattgataaagttgttcttgttttttctcCAGCTTGCACTAAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGCTGATAAAGAGTATGAGGGTGCCATTGCTGAGTCTGGGTTTCTTCTCAAggaagatgaaaataatttagaggCATTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTCCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAACTACGCATGGCAGTGGAGGAATTCAAAGGTGCACTTGCTGTTGACCCTAACCATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAGCTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAGATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCCTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACTGCTTCCGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTCGACAATAGGGAAGAAGCAGAGGCTAAATTCCAAGAAATTGCTGCTGCATATGAGGTTCTGAGCGACGAAGACAAACGCGTAAGATATGACAGGGGGGAGGACCTTGAAGAGACGGGAATGGGTGGCGGCGGTTTCAACCCTTTTGGTGGTGGTGGGCAGCAGTATACCTTTACTTTTGAGGGTGGCTTCCCTGGTGGAGGCTTTCCTGGTGGTGGATTTGGAGGGGGCTTTCCTGGCGGGTATGAATTCCATTTTTGA 1476 0.4207 MLNAMGFSLLTMDSVACRGLLYTFFILNFVLVCQLILLQPLVSASDGKPENAAELFERASQSIKVKHYTDALDDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSERSYKKFLELKPGNSAAEKELSQLLQAQSALETAQSLYDLGNFSKSLEYIDKVVLVFSPACTKAKLLKVKLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRMAVEEFKGALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALDSCSEALKINEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKSPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAEAKFQEIAAAYEVLSDEDKRVRYDRGEDLEETGMGGGGFNPFGGGGQQYTFTFEGGFPGGGFPGGGFGGGFPGGYEFHF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1031 491 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 9 490 IPR044620 -
Ssu4g1031 491 SUPERFAMILY TPR-like 48 368 IPR011990 GO:0005515
Ssu4g1031 491 Gene3D Tetratricopeptide repeat domain 41 370 IPR011990 GO:0005515
Ssu4g1031 491 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Ssu4g1031 491 Pfam Tetratricopeptide repeat 66 119 - -
Ssu4g1031 491 SMART dnaj_3 372 431 IPR001623 -
Ssu4g1031 491 Pfam DnaJ domain 373 436 IPR001623 -
Ssu4g1031 491 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Ssu4g1031 491 Coils Coil 119 139 - -
Ssu4g1031 491 CDD DnaJ 373 428 IPR001623 -
Ssu4g1031 491 SMART tpr_5 52 85 IPR019734 GO:0005515
Ssu4g1031 491 SMART tpr_5 319 352 IPR019734 GO:0005515
Ssu4g1031 491 SMART tpr_5 132 165 IPR019734 GO:0005515
Ssu4g1031 491 SMART tpr_5 201 234 IPR019734 GO:0005515
Ssu4g1031 491 SMART tpr_5 86 119 IPR019734 GO:0005515
Ssu4g1031 491 SMART tpr_5 285 318 IPR019734 GO:0005515
Ssu4g1031 491 Coils Coil 409 429 - -
Ssu4g1031 491 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Ssu4g1031 491 SUPERFAMILY Chaperone J-domain 367 474 IPR036869 -
Ssu4g1031 491 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Ssu4g1031 491 PRINTS DnaJ domain signature 393 408 IPR001623 -
Ssu4g1031 491 PRINTS DnaJ domain signature 411 431 IPR001623 -
Ssu4g1031 491 PRINTS DnaJ domain signature 431 450 IPR001623 -
Ssu4g1031 491 PRINTS DnaJ domain signature 375 393 IPR001623 -
Ssu4g1031 491 Gene3D DnaJ domain 371 477 IPR036869 -
Ssu4g1031 491 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1031 Ssu-Chr4 16548188 16553280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1031 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 2.19e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1031 K09523 - gmx:100804685 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1031 4 16548188 16553280 Ssu4g1031 4 16548188 16553280 ECH