Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1027 ATGGCAACTGAAGCACATGGCTTTCCCAAGATTAATGACCAAGGCACTTCTAGTAGAGCTGATAACCCAATTCAAAAGGATGTAGAGTCATCCGAAATAGCTGAGGAACTCCCGAGTAGACATTCGCATAGGAGAAGGAAAAACCTTATCCTGGAGATACCCACAAGAACTCTGGATGAAACAAGAGAGGAATTTTTTAGAACAAACCAACCTCCAACTCCATCTCTTAGAAGCCAAATCAATGAGTTCCAAGGTCCCTCGTCTGCAAATAATAGATCAACTATCAAAACCAGTATTCCCAAGCTCAGTTTTAAATTTCGCAACATGAGTTCAGATGTTAAAGAGGCTTCCATCCTAGAACTTGAAGGTTCACCTCCAGAGCCACTGCAAGTGCCTATGATTTCAAGAACATTATCACCTAATGGGAAGAAAATATCATCCTTACCTGTAACCCCAATTGCTCACTCAAATCGGGAGTCTGAACATGGAGGGAACATTGCCTATCCAGCAACACATGTTAAAAAAGGACAGCAATTACCGATGCATCGTTCCCGTTCAGTTCCCATGCTCACTGAAGATGGCAACACATATGTAGGTGGCATGTTTCGTATTGTTCCTACCACACCACGGTTGGCTGGGAGTATTGCCATGTGGCCCACGACATCTATGAAATCTCCACCTGACCATACTGTTGAAAATGAGGATGGGGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGGTTGAATTGGGAGAAGGTGCCGATACCCTTAAAATGGGGTGCAGCTGCAAAGGTGAACTTGCACTGGCGCACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGCGATGTGTGCAAGCAAGAAGTTCAGAACCTACCTGTTACTCTTTTGAGAGTTCTAAATGGCCAGGCACTTAACTTGACAAGGACCAGAAGTCAACAATACAGGGCTTGGCAAAATGTTCCCATTCTTGTGATTATCAACATGCTGgcatacttttgttttcttgagCAGCTACTTGTTTCAAGTGTGGGATCTGGTGCCATTGCCatttctctccctttttcttGTATACTGGGTCTTCTTGCAAGCATGACATCCACAGCAATGGTGAGGAGTGAACATGTTTGGGTTTATGCAATTGTCCAGTTTGTTATGGTGGTTCTTGCTGGACGTCTTTCCTATTCACTGGTAAGGAAATCTTGTGTGTGTTTTCCCCCTTCACCCCATTTCTCCAAGGCGTAG 1269 0.4279 MATEAHGFPKINDQGTSSRADNPIQKDVESSEIAEELPSRHSHRRRKNLILEIPTRTLDETREEFFRTNQPPTPSLRSQINEFQGPSSANNRSTIKTSIPKLSFKFRNMSSDVKEASILELEGSPPEPLQVPMISRTLSPNGKKISSLPVTPIAHSNRESEHGGNIAYPATHVKKGQQLPMHRSRSVPMLTEDGNTYVGGMFRIVPTTPRLAGSIAMWPTTSMKSPPDHTVENEDGEDIPEEEAVCRICLVELGEGADTLKMGCSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQALNLTRTRSQQYRAWQNVPILVIINMLAYFCFLEQLLVSSVGSGAIAISLPFSCILGLLASMTSTAMVRSEHVWVYAIVQFVMVVLAGRLSYSLVRKSCVCFPPSPHFSKA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1027 422 ProSiteProfiles Zinc finger RING-CH-type profile. 238 300 IPR011016 GO:0008270
Ssu4g1027 422 SMART ringv_2 245 294 IPR011016 GO:0008270
Ssu4g1027 422 CDD RING_CH-C4HC3_MARCH 246 294 - -
Ssu4g1027 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 301 IPR013083 -
Ssu4g1027 422 MobiDBLite consensus disorder prediction 218 237 - -
Ssu4g1027 422 SUPERFAMILY RING/U-box 242 297 - -
Ssu4g1027 422 MobiDBLite consensus disorder prediction 25 50 - -
Ssu4g1027 422 Pfam RING-variant domain 246 293 IPR011016 GO:0008270
Ssu4g1027 422 PANTHER OS02G0165000 PROTEIN 18 411 - -
Ssu4g1027 422 MobiDBLite consensus disorder prediction 10 24 - -
Ssu4g1027 422 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 18 411 - -
Ssu4g1027 422 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1027 Ssu-Chr4 16521389 16525597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1027 231 300 C3H Transcription Factor Family AT2G37950 41.096 2.97e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1027 - - gmx:100789854 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1027 4 16521389 16525597 Ssu4g1027 4 16521389 16525597 ECH