Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1025 atgGGCAACATCTCAAGCAGCGGCGGTGACCAACGTCGCCGACACAGCGGAGGTTCAAGGCGGAGTCACCCCCCGCCGCCTCCGCCGGTGACGCCGCAGCCTGAGATCACCGCGAATCCATTCGTGTACCCTGGTGCTGCGCCGTACCCGAACTCTCCCATGCATTACACGCAGTACCATTACCCGGGATACTATCCTCCGGTGGCTTTGCCTGatcaacatcaacatcatcatccgCATCCGCATCCGCATCCGCATCCGCACATGGACCCGGCGTGGATTCCAGGGCGGTACCATTGTGGGCCGATGATGCTTAATCCCGCACCGTTTGTTGAGCATCAGAAGGCCGTTACCATAAGGAACGATGTCAATATCAGGAAAGAGACCCTTAGGCTTGAACCCGATGAGGAAAACCCTGGCCACTTCCTTGTCTCGTTTTCGTTCGATGCCACCCTTTCTGGGAGCATCACCTTATATTTCTTTGCAAAAGAAGGTGAAGACTGCATCCTCACACCAATGAAGGAAAACCATCTTGCACCAGTGACTGTGCATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTAttgatttttcagtttttgagGAGTCTGAGTTATTGAAAGCGGGTGATGTGGATGTCTACCCTCTAGCCGTGAAGGCTGATGCATCCCCTGGTAATCATGACGAGTCAGATAGAACTCCAACATCTGGTAACACAAACTCTCAGATTACCCAAGCGGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGATCTTGTGGGTGAATGGGATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACGGAGACTGACTTGGATGAGAATGACCAAGGAAAAGAATGCGTCATCTGCTTGTCAGAGCCTCGTGATACAATTGTCCATCCCTGTCGGCATATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1071 0.4939 MGNISSSGGDQRRRHSGGSRRSHPPPPPPVTPQPEITANPFVYPGAAPYPNSPMHYTQYHYPGYYPPVALPDQHQHHHPHPHPHPHPHMDPAWIPGRYHCGPMMLNPAPFVEHQKAVTIRNDVNIRKETLRLEPDEENPGHFLVSFSFDATLSGSITLYFFAKEGEDCILTPMKENHLAPVTVHFQQGLGQKFRQPAGTGIDFSVFEESELLKAGDVDVYPLAVKADASPGNHDESDRTPTSGNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSTETDLDENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1025 356 Pfam Zinc finger, C3HC4 type (RING finger) 300 346 - -
Ssu4g1025 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 351 IPR013083 -
Ssu4g1025 356 PANTHER MAHOGUNIN 1 355 IPR045194 GO:0061630
Ssu4g1025 356 MobiDBLite consensus disorder prediction 21 35 - -
Ssu4g1025 356 SUPERFAMILY RING/U-box 301 346 - -
Ssu4g1025 356 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 301 341 IPR045195 -
Ssu4g1025 356 ProSiteProfiles Zinc finger RING-type profile. 302 341 IPR001841 -
Ssu4g1025 356 SMART ring_2 302 340 IPR001841 -
Ssu4g1025 356 MobiDBLite consensus disorder prediction 1 43 - -
Ssu4g1025 356 MobiDBLite consensus disorder prediction 67 88 - -
Ssu4g1025 356 MobiDBLite consensus disorder prediction 226 247 - -
Ssu4g1025 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1025 Ssu-Chr4 16488541 16491607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1025 35 321 C3H Transcription Factor Family AT3G09770 55.949 2.27e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1025 - - aprc:113862864 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1025 4 16488541 16491607 Ssu4g1025 4 16488541 16491607 ECH