Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1024 ATGAAGATTCCTTGTTCTTTTTGTACTTGTTTCTCAGCGTCGGTCAAAGAAAAAACCAAGCACGAAGAGCCAGAGGAAGTTCATGAAGGAAACTTTCGCATATTCACTTATAGAGAATTGAATTCTGCCACACGCGGTTTTCATCCCTCGGAGAAGGTTGGAGAAGGAGGCTTTGGCTCTGTCTAcaagGGGCAGCTTCGGGATGGATCTTTGGTGGCCGTGAAAGTGCTTTCGATTGAGCTAGAATCCTTGAGAGGAGAGAAGGAGTTTGTGGCAGAATTGACTACACTAGCAAATATCAAGCACCAAAATTTGGTCATTCTTCGAGGGTGCTGTGTAGAAGGAGCCCACAGATACATAGTCTACAGTTACATGGAAAACAACAGCCTTCGTTACACTTTCTTAGGTTCGGAGCAAAGTAGGATGAAATTCAGCTGGGAAGCTCGGAGGGATGTATCCATAGGTGTGGCCAGTGTGCTTGCCTTTCTCCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCttcttgatcaaaattttacaCCAAAAGTCTCAGATTTTGGCTTGGCCAAGCTACTAAGAGATGAAAAGTCCCACCTCACAACCCAAGTTGCAGGCACATTTGGTTATCTTGCTCCAGACTACGCCAGTTCTGGCCACTTGACACGAAAATCGGATGTTTATAGCTTTGGAGTACTACTTTTAGAAATTGTCAGTGGCCAACCAGTGGTAGATGCTCATCAACACGTGGAACGTTTCATAGTTGAGAGGGCGTGGGCAGCGTATGAGGCTAATGATCTTTTGAGAATGGTGGATCCAGTGCTGAGCATGAACTTTCCCGTGGAAGAAGCGAAACGGTACCTAATGGTGGGGCTGCGTTGTGTGCAAGAAACTGCAAGGCTTCGGCCACGAATGTCAGAGGTTGTAGAGATGTTGAAAAACAACATTGACATGGGAGATTTTCGTATTTCACAACCAGGATTTGTCAATGATTTTAGGAACGCCAAAATCAGGAGGCAATTGAATTCATCAGAAGAATCAAGTGCTACCTTTGCAGACTCCTCCGGATGGAGTACGACCAATCTTGCCCGTTAG 1116 0.4462 MKIPCSFCTCFSASVKEKTKHEEPEEVHEGNFRIFTYRELNSATRGFHPSEKVGEGGFGSVYKGQLRDGSLVAVKVLSIELESLRGEKEFVAELTTLANIKHQNLVILRGCCVEGAHRYIVYSYMENNSLRYTFLGSEQSRMKFSWEARRDVSIGVASVLAFLHEELQPHIVHRDIKSSNVLLDQNFTPKVSDFGLAKLLRDEKSHLTTQVAGTFGYLAPDYASSGHLTRKSDVYSFGVLLLEIVSGQPVVDAHQHVERFIVERAWAAYEANDLLRMVDPVLSMNFPVEEAKRYLMVGLRCVQETARLRPRMSEVVEMLKNNIDMGDFRISQPGFVNDFRNAKIRRQLNSSEESSATFADSSGWSTTNLAR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1024 371 PANTHER RECEPTOR-LIKE KINASE 9 347 - -
Ssu4g1024 371 PIRSF ILK 12 326 - -
Ssu4g1024 371 SUPERFAMILY Protein kinase-like (PK-like) 31 338 IPR011009 -
Ssu4g1024 371 Gene3D Phosphorylase Kinase; domain 1 16 124 - -
Ssu4g1024 371 CDD STKc_IRAK 53 321 - -
Ssu4g1024 371 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Ssu4g1024 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Ssu4g1024 371 Gene3D Transferase(Phosphotransferase) domain 1 125 330 - -
Ssu4g1024 371 ProSiteProfiles Protein kinase domain profile. 47 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1024 371 Pfam Protein kinase domain 48 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1024 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 347 - -
Ssu4g1024 371 SMART serkin_6 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1024 Ssu-Chr4 16473800 16475507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1024 16 338 Receptor kinase-like Gene Family AT1G56120 46.012 5.89e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu4g1024 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1024 - - gmx:100790388 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1024 4 16473800 16475507 Ssu4g1024 4 16473800 16475507 ECH