Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1023 ATGTTGATAGTTACCAACCGATCTTATCACAGAATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGTTGGCTGCTGAACAGGAAGCGCAAAGGATTGTCAATGCTGCGAAAAATGAAAAATTGGCTAGACTGAAGCAGGCCAAAGAAGAGGCTGAAAAGGAGATTGCGGAATATAGAGCACAGTTGGAGTATGAGTTTCAAAAGAAAGTGTCAGAGAGTAGTGGAGATTCTGGTGCTAATGTCAAGAGACTTGAGCAAGAGACTGAAGCAAAGATCCATCACCTGAAAACTGAGGCTGGGAGGATATCAGGGGATGTTGTCACCATGCTCCTTAAGTATGTAACAAGTGTGAAGAATTAG 366 0.4344 MLIVTNRSYHRMASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEYEFQKKVSESSGDSGANVKRLEQETEAKIHHLKTEAGRISGDVVTMLLKYVTSVKN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1023 121 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 17 120 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu4g1023 121 Coils Coil 21 70 - -
Ssu4g1023 121 Pfam Vacuolar (H+)-ATPase G subunit 18 120 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu4g1023 121 Gene3D - 11 121 - -
Ssu4g1023 121 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 12 121 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu4g1023 121 PANTHER V-TYPE PROTON ATPASE SUBUNIT G1 12 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1023 Ssu-Chr4 16459997 16460745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1023 12 121 Primary Pumps ATPases(2) AT3G01390 76.364 1.12e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1023 K02152 - gmx:100305477 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1023 4 16459997 16460745 Ssu4g1023 4 16459997 16460745 ECH