Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1022 ATGGCAAAAGACGTCGAAACTGAGGCACTGCCACACAAGGACTACCACGACCCACCCCCCGCCCCATTCATCGACCCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATTCTCACCGTCATCGGCTACAACAGCCAGATCTCCGGAGGCGACCATTGCAACGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCCGGCATATCAGGGGGTCACATAAACCCGGCAGTGACGTTCGGGTTGTTTCTGGCTCGGAAGGTGTCGCTGGTGAGAGCAATTGCGTACATGGTGGCTCAGTGCTTGGGGGCCATATGCGGCGTTGGCCTTGTGAAGGCTTTTCAGAAGAGCTACTACAACAGGTACAAAGGTGGCGCCAACTTGCTCTCTGATGGCTACAGCAAAGGCACCGGCTTGGGCGCTGAGATTATTGGCACCTTTCTCCTTGTCTACACCGTCTTCTCCGCTACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCgtgTTGGCACCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTGGCCACCATCCCTATCACCGGCACTGGCATCAACCCTGCTAGAAGCCTCGGGGCTGCTGTCATATACAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTGCAATCTACCACCAGTACGTGTTGAGGGCCCAAGCGGCAAAGGCTCTCGGGTCTTTCAGGAGCTCCTCCAACCTGTAA 846 0.5674 MAKDVETEALPHKDYHDPPPAPFIDPAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNSQISGGDHCNGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQCLGAICGVGLVKAFQKSYYNRYKGGANLLSDGYSKGTGLGAEIIGTFLLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1022 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 278 IPR034294 -
Ssu4g1022 281 Gene3D Glycerol uptake facilitator protein. 21 281 IPR023271 -
Ssu4g1022 281 SUPERFAMILY Aquaporin-like 28 265 IPR023271 -
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 TIGRFAM MIP: MIP family channel proteins 40 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Ssu4g1022 281 PANTHER AQUAPORIN PIP2-4-RELATED 1 278 - -
Ssu4g1022 281 CDD MIP 36 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 Pfam Major intrinsic protein 28 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu4g1022 281 Coils Coil 279 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1022 Ssu-Chr4 16450786 16452363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1022 1 281 Major Intrinsic Protein MIP AT3G53420 80.836 7.91e-170 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1022 K09872 - gmx:100807883 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1022 4 16450786 16452363 Ssu4g1022 4 16450786 16452363 ECH
Ssu4g1022 4 16450786 16452363 Ssu8g0567 8 9155530 9157278 ECH
Ssu4g1022 4 16450786 16452363 Ssu3g2500 3 77417779 77419431 ECH