LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1020	ATGGAGTCAAAGGAGAAACTGAAAGAGGTGGAGAAGTGTTTGGATCCTCAGCTATGGCACGCGTGTGCGGGAGGGATGGTGCAAATGCCAGTGGTGAATGCTAAAGTCTTCTACTTCCCTCAGGGGCATGCTGAACATGCATGTGGGCCCGTGGACTTCAGGGCTTACCCCAAAATTCCACCCTTGATTCAATGCAGAGTGGGAGCTGTCAAGTACATGGCTGATCCCGAGACAGATGAGGTGTATGCGAAGCTTAGGCTTGTTCCTTTGAGCAGCAACGAGGTTGATTTTGAGGATGATGGTGTTGTTGGAGTTGGAGGAGGAATCAATGGATCTGAGACCAAGGATAAACCTCCCTCTTTTGCAAAAACCTTGACACAGTCTGATGCCAACAACGGCGGGGGCTTTTCTGTTCCCAGATATTGTGCTGAGACGATTTTCCCTCGTTTGGACTATTCCGCGGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCACGGCGAGACGTGGAAATTCCGGCACATTTATCGGGGCACGCCGCGGCGGCATCTGCTAACCACCGGGTGGAGTACTTTTGTCAATCACAAGAAGCTCGTGGCGGGGGATTCAATTGTGTTTCTGAGGGCAGAAAATGGTGATCTCTGTGTTGGGATTCGGAGAGCCAAGAGGGGGGGGATTGGTGGAGGACCTGAGGCTCCTTCGGGGTGGAATTCTGTTGGGGGGATTCGCCCTGTTGGGCCTTATGGAGGATTTTCAGCGTTTTTGAGGGAGGAGGATAACCAACTCATGAGAAATGGTAATGGGTTGAGTCCAAGTGCAAAGGGGAAGGTGAGGCCCGAAGCAGTTGTCGATGCTGCAACTCTTGCTGCCAATATGCAGCCCTTTGAGGTCGTTTACTACCCTCGGGCAAGTACTCCGGAGTTTTGTGTGAAGGCGTCTTTGGTTAGAGCAGCATTGCAGATTAGGTGGTGTCCCGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTCAGGTTGCTGACCCAGGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAACCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATCCATCTTTCCCCTTTCTCACCACCAAGGAAGAAGCTGAGATTGCCTCAACACCCAGATTTTCCCCTTGAAGGCCAGATTTCATTGCCAACATTTCCCAGCAACTTTCTAGGTCCCAGCAATCCCTTTGGTTGTCTACCTGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTAATTATGGTATATCCTTATCAAATCTCCACCTCAATAAACTGCAGTCAGGTCTATTTCAAGCAGGTTTCCCACCCCTTGATCACACTGCTTCACCAATATTGAGGGTCCCCAACACCCCAGCATTGCAAAAGGCCAGCACGAGTGACAACGTCTCTTGCTTATTATCCATGGCAACTTCCACTCAATCTTCAAAGAAAGTGGATGATGTGAAGCCACCCCAACTGGTGCTTTTTGGCCAAACAATCCTCACCGAGCAGCAAATCTCTCTGAGCACCTCTGCTGACACAGTTTCCCCAGTTCCCACTAGAAATAGTTCATCTGATGGAAGTGCTGATAAAGTGACCAAGTTTTCAGATGGTTCCGGGCCTGCTCTTCACACACAACGCTCCTCTTGTGAGAGGTTCCCGTGGTACAAGGATCAGCGCAAGGAAACCTTGCCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTCTCATTGCTTGGGTCTTATGATGAATTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATCTGTGGTGTTAAGTCACGTGCTTTACCGTGATAGAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGTGACTTCACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAGCAGCGACAGTAGAGGAAAGTAG	2082	0.4928	MESKEKLKEVEKCLDPQLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPLIQCRVGAVKYMADPETDEVYAKLRLVPLSSNEVDFEDDGVVGVGGGINGSETKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGGIGGGPEAPSGWNSVGGIRPVGPYGGFSAFLREEDNQLMRNGNGLSPSAKGKVRPEAVVDAATLAANMQPFEVVYYPRASTPEFCVKASLVRAALQIRWCPGMRFKMPFETEDSSRISWFMGTISSVQVADPGWPDSPWRLLQVTWDEPELLQNVKRVNPWLVEIVSNMPTIHLSPFSPPRKKLRLPQHPDFPLEGQISLPTFPSNFLGPSNPFGCLPESTPAGMQGARHANYGISLSNLHLNKLQSGLFQAGFPPLDHTASPILRVPNTPALQKASTSDNVSCLLSMATSTQSSKKVDDVKPPQLVLFGQTILTEQQISLSTSADTVSPVPTRNSSSDGSADKVTKFSDGSGPALHTQRSSCERFPWYKDQRKETLPSLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIEKSVVLSHVLYRDRTGAVKHIGDEAFSDFTKTARRLTILMDSSSDSRGK	693

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu4g1020	693	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	3	684	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Ssu4g1020	693	Pfam	Auxin response factor	286	368	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Ssu4g1020	693	PANTHER	AUXIN RESPONSE FACTOR	3	684	-	-
Ssu4g1020	693	CDD	B3_DNA	119	221	IPR003340	GO:0003677
Ssu4g1020	693	Gene3D	-	323	396	-	-
Ssu4g1020	693	Pfam	B3 DNA binding domain	121	222	IPR003340	GO:0003677
Ssu4g1020	693	SUPERFAMILY	DNA-binding pseudobarrel domain	116	224	IPR015300	-
Ssu4g1020	693	Gene3D	-	605	690	-	-
Ssu4g1020	693	MobiDBLite	consensus disorder prediction	549	570	-	-
Ssu4g1020	693	Gene3D	-	119	223	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1020	Ssu-Chr4	16385958	16388681	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g1020	10	690	B3 DNA Binding Superfamily	AT4G30080	60.029	0.0	764

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Ssu4g1020		B3	3.6e-21	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1020	-		-	gmx:100791442	1167.53

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ssu4g1020	4	16385958	16388681	Ssu7g1072	7	23600361	23602896	ECH
Ssu4g1020	4	16385958	16388681	Ssu4g1020	4	16385958	16388681	ECH
Ssu4g1020	4	16385958	16388681	Ssu8g0576	8	9273743	9276576	ECH
Ssu4g1020	4	16385958	16388681	Ssu3g2491	3	77250703	77253688	ECH

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