Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1020 ATGGAGTCAAAGGAGAAACTGAAAGAGGTGGAGAAGTGTTTGGATCCTCAGCTATGGCACGCGTGTGCGGGAGGGATGGTGCAAATGCCAGTGGTGAATGCTAAAGTCTTCTACTTCCCTCAGGGGCATGCTGAACATGCATGTGGGCCCGTGGACTTCAGGGCTTACCCCAAAATTCCACCCTTGATTCAATGCAGAGTGGGAGCTGTCAAGTACATGGCTGATCCCGAGACAGATGAGGTGTATGCGAAGCTTAGGCTTGTTCCTTTGAGCAGCAACGAGGTTGATTTTGAGGATGATGGTGTTGTTGGAGTTGGAGGAGGAATCAATGGATCTGAGACCAAGGATAAACCTCCCTCTTTTGCAAAAACCTTGACACAGTCTGATGCCAACAACGGCGGGGGCTTTTCTGTTCCCAGATATTGTGCTGAGACGATTTTCCCTCGTTTGGACTATTCCGCGGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCACGGCGAGACGTGGAAATTCCGGCACATTTATCGGGGCACGCCGCGGCGGCATCTGCTAACCACCGGGTGGAGTACTTTTGTCAATCACAAGAAGCTCGTGGCGGGGGATTCAATTGTGTTTCTGAGGGCAGAAAATGGTGATCTCTGTGTTGGGATTCGGAGAGCCAAGAGGGGGGGGATTGGTGGAGGACCTGAGGCTCCTTCGGGGTGGAATTCTGTTGGGGGGATTCGCCCTGTTGGGCCTTATGGAGGATTTTCAGCGTTTTTGAGGGAGGAGGATAACCAACTCATGAGAAATGGTAATGGGTTGAGTCCAAGTGCAAAGGGGAAGGTGAGGCCCGAAGCAGTTGTCGATGCTGCAACTCTTGCTGCCAATATGCAGCCCTTTGAGGTCGTTTACTACCCTCGGGCAAGTACTCCGGAGTTTTGTGTGAAGGCGTCTTTGGTTAGAGCAGCATTGCAGATTAGGTGGTGTCCCGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCGGATAAGTTGGTTTATGGGAACCATATCTTCTGTTCAGGTTGCTGACCCAGGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAACCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATCCATCTTTCCCCTTTCTCACCACCAAGGAAGAAGCTGAGATTGCCTCAACACCCAGATTTTCCCCTTGAAGGCCAGATTTCATTGCCAACATTTCCCAGCAACTTTCTAGGTCCCAGCAATCCCTTTGGTTGTCTACCTGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTAATTATGGTATATCCTTATCAAATCTCCACCTCAATAAACTGCAGTCAGGTCTATTTCAAGCAGGTTTCCCACCCCTTGATCACACTGCTTCACCAATATTGAGGGTCCCCAACACCCCAGCATTGCAAAAGGCCAGCACGAGTGACAACGTCTCTTGCTTATTATCCATGGCAACTTCCACTCAATCTTCAAAGAAAGTGGATGATGTGAAGCCACCCCAACTGGTGCTTTTTGGCCAAACAATCCTCACCGAGCAGCAAATCTCTCTGAGCACCTCTGCTGACACAGTTTCCCCAGTTCCCACTAGAAATAGTTCATCTGATGGAAGTGCTGATAAAGTGACCAAGTTTTCAGATGGTTCCGGGCCTGCTCTTCACACACAACGCTCCTCTTGTGAGAGGTTCCCGTGGTACAAGGATCAGCGCAAGGAAACCTTGCCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTCTCATTGCTTGGGTCTTATGATGAATTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATCTGTGGTGTTAAGTCACGTGCTTTACCGTGATAGAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGTGACTTCACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAGCAGCGACAGTAGAGGAAAGTAG 2082 0.4928 MESKEKLKEVEKCLDPQLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPLIQCRVGAVKYMADPETDEVYAKLRLVPLSSNEVDFEDDGVVGVGGGINGSETKDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGGIGGGPEAPSGWNSVGGIRPVGPYGGFSAFLREEDNQLMRNGNGLSPSAKGKVRPEAVVDAATLAANMQPFEVVYYPRASTPEFCVKASLVRAALQIRWCPGMRFKMPFETEDSSRISWFMGTISSVQVADPGWPDSPWRLLQVTWDEPELLQNVKRVNPWLVEIVSNMPTIHLSPFSPPRKKLRLPQHPDFPLEGQISLPTFPSNFLGPSNPFGCLPESTPAGMQGARHANYGISLSNLHLNKLQSGLFQAGFPPLDHTASPILRVPNTPALQKASTSDNVSCLLSMATSTQSSKKVDDVKPPQLVLFGQTILTEQQISLSTSADTVSPVPTRNSSSDGSADKVTKFSDGSGPALHTQRSSCERFPWYKDQRKETLPSLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIEKSVVLSHVLYRDRTGAVKHIGDEAFSDFTKTARRLTILMDSSSDSRGK 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1020 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu4g1020 693 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu4g1020 693 PANTHER AUXIN RESPONSE FACTOR 3 684 - -
Ssu4g1020 693 CDD B3_DNA 119 221 IPR003340 GO:0003677
Ssu4g1020 693 Gene3D - 323 396 - -
Ssu4g1020 693 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Ssu4g1020 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 224 IPR015300 -
Ssu4g1020 693 Gene3D - 605 690 - -
Ssu4g1020 693 MobiDBLite consensus disorder prediction 549 570 - -
Ssu4g1020 693 Gene3D - 119 223 IPR015300 -
Ssu4g1020 693 ProSiteProfiles PB1 domain profile. 607 690 IPR000270 GO:0005515
Ssu4g1020 693 MobiDBLite consensus disorder prediction 549 584 - -
Ssu4g1020 693 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Ssu4g1020 693 SMART B3_2 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1020 Ssu-Chr4 16385958 16388681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1020 10 690 B3 DNA Binding Superfamily AT4G30080 60.029 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu4g1020 B3 3.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1020 - - gmx:100791442 1167.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1020 4 16385958 16388681 Ssu7g1072 7 23600361 23602896 ECH
Ssu4g1020 4 16385958 16388681 Ssu4g1020 4 16385958 16388681 ECH
Ssu4g1020 4 16385958 16388681 Ssu8g0576 8 9273743 9276576 ECH
Ssu4g1020 4 16385958 16388681 Ssu3g2491 3 77250703 77253688 ECH