Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1015 ATGGAAGCAACCGCCGTGAGCAATGGGCACCAAAACGGTTCGTTTTGCTTGGCGAGCAAGGGCAGCGGTGACCCGCTGAACTGGGGCGCCGCGGCGGAGGCGCTCAAGGGGAGCCACCTGGACGAGGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGCCGTCCGGCTCGGCGGCGAGACGCTCACGATCGCTCAGGTGGCAGCCGTCGCCGGCCACGACCGAGGCGTGACGGTGGAGCTGTCGGAGTCGGCGAGGGAAGGCGTTAAGGCCAGCAGCGAGTGGGTGATGAACAGCATGAACAACGGCACCGACAGTTACGGCGTCACCACCGGGTTCGGTGCCACCTCGCACCGCCGAACCAAACAGGGTGGTGCTTTGCAGAGAGAGCTCATCAGGTTTTTAAACGCTGGAATATTTGGCAATGGAACTGAATCATGCCACACACTGCCACACACTGCAACTAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCCGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAATTACTTAACGCTAAGGAAGCTTTTCAATTGGCTGGCATCAACTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGGCTTGCCCTTGTTAATGGCACGGCTGTTGGTTCTGGCTTAGCTTCTATGGTTCTCTTTGAGGCAAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCTAAGAAGTTGCATGAGACAGACCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTCATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATCAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCACTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGTTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAATTCTTTGGGTCTGATTTCATCTAGAAAGACAAATGAAGCTATTGAGATCCTTAAGCTCATGTCGTCCACATTCTTGATTGCCCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAGTTCGGTCAAGAACACTGTGAGCCAAGCTTCTAAGAGGACTCTTACCACAGGTGTCAATGGAGAGCTCCATCCTTCAAGATTTTGTGAAAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATGTATTTTCCTATATAGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAATGAGAAGGATGTGAACACATCAATCTTTCAAAAGATTGCAACCTTTGAGGAGGAGTTGAAGACTCTATTGCCAAAGGAGGTTGAAAGTGCAAGGGTTGCTTATGAGAGTGGCAGAGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTATCCACTATACAAATTTGTGAGAGAGGAGTTAGGGACTGGGTTGCTAACTGGAGAAAAGGTCAGGTCTCCAGGTGAAGAGTGTGACAAATTATTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTGGAATGCCTTGGAGAGTGGAATGGAGCTCCTCTTCCAATCTGTTAA 2148 0.4697 MEATAVSNGHQNGSFCLASKGSGDPLNWGAAAEALKGSHLDEVKRMVAEYRKPAVRLGGETLTIAQVAAVAGHDRGVTVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTESCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGELLNAKEAFQLAGINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKSSVKNTVSQASKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLMQKLRQVLVDHALVNAENEKDVNTSIFQKIATFEEELKTLLPKEVESARVAYESGRAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1015 715 Gene3D - 528 649 IPR023144 -
Ssu4g1015 715 Pfam Aromatic amino acid lyase 62 533 IPR001106 -
Ssu4g1015 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 20 715 - -
Ssu4g1015 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Ssu4g1015 715 CDD PAL-HAL 60 525 IPR001106 -
Ssu4g1015 715 PANTHER HISTIDINE AMMONIA-LYASE 20 715 IPR001106 -
Ssu4g1015 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Ssu4g1015 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Ssu4g1015 715 Gene3D - 16 261 IPR024083 -
Ssu4g1015 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1015 Ssu-Chr4 16246420 16250527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1015 24 715 Monolignol Biosynthesis Gene Families AT2G37040 84.104 0.0 1243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1015 K10775 - gmx:100811101 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1015 4 16246420 16250527 Ssu7g1082 7 23830893 23835073 ECH
Ssu4g1015 4 16246420 16250527 Ssu4g1015 4 16246420 16250527 ECH