Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g1012 | ATGAATGCTGAGACTCTTGTTGTGGATGAAGATGGAGGGGATGCCTGTTCTAGGTGCAACGAGGGTTTGACTGAATATAAAGATAATGCACAAGCAAATCCTcatatgaaagataaaaaaggagGCGGGGAAGTTGTATGTTCCAATTGCATGCGTGGTGGAGTACTTCTATGTTGCTGTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTGTGGATCCTCCTCTCAATTACATTCCTTTGGGGTTTTGGCACTGTATCTGgtgcattaagaaaaaaatagagctTGGGGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAACAATAGAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAATCAAAAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAGAGGGAACTGCAGatGCCAAATTACCAAGTTACCAGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTGCTGCTAAAAAGggaaattatattatcaaaacaaaatgatcAACATTTTGATGGGCATGGTGACAATGATTCAATTTGCCGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATATTACGTGGGAGTTAGATGATGCTTCATTTTTGACGGCACCTGAAGGCATGAAACTCATAGATGATTATGAACGTCGTTGCAAGAGAGCGGATAGACTgtcaaaaaatcattttgaagcTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTATCAGAGTTGCCGTCTGGGGATTCACCAGGATATGATAACCagcatttgagttatgtgaacAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATTGTAGATGATCACATTGACcagGAGCGGGTTATGAAGGtgattttgtttatattatctttGAATTGTAATGTGAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAGCAGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAGAGATGTAAGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGATGATGGGATCttatttcaaatattgttaTCATCTGCTGATATTATTGTTGAGGACTTACATGCACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCGATCCAGAATTTTAGGACAACTTGACAATATTAAGATTCTTAAAGCTGAAATGAGGCTCCTTCTTGTTAATGGACAAATCAAGGAAGATCGAGCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGGACATCATGGGTCAAACATTGCTCAAATGGAAACTTATTTCTCTGATAGCATTTCCACTTTGAAGAGCCAATTGGAAAAATATGTTGTGTTTAAATGCAAATCAGGTTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCCAATTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAGTCTGCCTCAGTTGATACCCTCCATGACCTTATTATCTCAATGAGGAAGTGCTGTGACCACCCTTATCTCGTGAACCCGACACTGCATGGTTTTGTTACTAAAGGTCTACCTGTTGAAAAGCATTTAGATATTGAAATAAAAGCAAGTGGAAAACTGCAACTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCGCGGGTTAAGGGTGTTAATAGTATTTCAGTCAACTTGTGGTTCTAGATCGATTGGAAATATTTTAGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGATAGAGGTTATACCCCCAAAACGAAGCAAGCTGCTTTAGACACATTTAATGACAAAGAAAGTGGAAAATTTGTCTTCTTGATGGATAACCGTGCTTGTCTCTCTAGCGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTGGATCCACAGAATGACTTAAGAGGCTTACAAAGGATGTCTATCAGCTCACAGTTCAAACAGTTTACAGTTTTCAGATTGTACACATATTTCACTgttgaagaaaaggttttaaTGCTTGCAAAAGAGGGTATAGCTCTTGACATCAATGCACGGTTGATTAGCCAGAGTACTTATCACACCCTGCTAAAATGGGGTACCTGCTATCTGTTCAATAAGCTTGATGACTTACATGCCAGTGCAACCTTTGTTTCTGATCCAGATATCGCTGATCAGTCAATTCTACCTGATGTAATCTGTGAATTATCATCCCAATTGGCTTGTAGTGCTGATGATACTGATTGTCATGGATGGTCATTCATATCAAGAATACAGCAGAATGGAGGGGAATATGCGAGGAGCATTTTATTGCTAGgagaaagaataatgaagaaatTGGGCAGTGAGCCATGTTCTTTTTCCTGGAGTGATCTTGAAGGAAGGCATCCTCGATGGAAATTTTTGTCTGTTTCATCTCAGAGGATCAGGAAAACAGTCAGACATTTTGATCACATACTAAAAGAATCTGAATGTGAAAATGATACCTTCATAGGAAAGAGGACAGCATCGGAGGATAATGTTGATCCCAACAGGTTGAATGTTTCCAAGGATAATGTTGATCCTAGGAGGAGAGAAGTGTCCAAGGATAATTTTGATCCTACGTGGAGGAAACTGACTGAGGATATCGTTGACCCCAAGAGGAGGAAAGTGTCCAAGGATGTTGTTGAAACAAATGGGAGGAAAGTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTCCAATGATATTGTTTGTTTGAAGGGCAGGAAAATGTCCAAGAATATTGTTGATTCCAAATATCGGAAAACAAGGTTGAAGAGCAAGAAGAATCCAAGTGTTGTCAATAGAGCAAGTAAATCAAATGGTAATTCAAATGGTTTGTCTAATGTACTTGATTCCACAATGCATCCTTTGACCAATGAAACTACAGGAGCAACTGCAACAAACATGCAATTTTCAGAGAAAAACAAACTGCTTGACATAccaaataacatcaaattctTGCCAAAGCCAGATATATCAGGTCTTTGTGACATTCTACATTTTTCGAAAAATGTCAAGGCTGTTGCCGTGAGGATTCTTGAGCACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCGGCTTCTTTGTTGAAACACAAGATTGATAGGAAGGATTCACTCGCTCTTGCAAAACTGCACTTGAATTTCGATTGCAAGGAAGAGGAAGCCACCGATGTTTACTCAGAACTGTGGAAGCATGAGAAggatttttcaatttgtttacaaaGTGGACTTTGTGTTGagaaatgtaatataaattgTGCTTCAGACTCTGAGATGCCTGAGCTGAATGATTTGGCAGAGGGGAACCAGAAGGATTTTCTGGGTACTTGTGTTTCAAAACTTGTGAAATCTGTCACAAATGAACGTGATCTTCAAATGAAATCTCCCACAACAGTGGTTTCACAAGACCAGACTTGTActcataaaatttgtttatctcCAAAGACACCCGGTAGTTTTCCAGTGGAAGCAGATGCTATCTCCATGGAATCTGGCTCAGAAGATGACAGAATGAATGCTATGACCTTAATAACAGCAGAAGATTCATCCCTTGATCCCTGGAGTCATGATGTCAACCCTGTTACAGGTTCTTTGGAAAGACAGAGTCCTGTTAGAAGTACAGATATTACACAATCTGATGGCAAAGTATCTGAAGGTCCTCAAATTTTAGTGAATGAAGTGGTTGCTATTGACAATGCTATGAATATGTCTACTCATCCTGTGCAGCTTGACAGTGTTGAGACAGATGCTGCAACTTGCATTAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAGTGTAATGAGTCCTGTATGTGGTGAGTCAACGGCTCCGGAGTTTGCTGAGACTACCTTACCATATATGCAACCATCGCATGCAAATTTGTGGTCATTGCCTCAGATGGCAATGTCTGCTATTCCCTCTTTTTCGGAGCACCGTTCAGCTAATACTGTCATGCCTCcagatgatattttttatcatagtAGTGAGGATCATTGCTACATTGATGAGGCCGAAGTAATATTGGAAGCACCAAATGACTTTGTGGAACCAGCTAACTCTTCCTTTGTTTCACCTGTGATACTGCAACCCTTCACTAGTGTGCTCGTGAATGAAAATACGACACATGTACCCGACAGCATTACTATTCCTGGATATGTGAACAGTGATTATTTTCAAGATCACTCTGTGACTTCTGAAATGTCCCACCTTGCCTATCCAGGCCCACTACTGGGTGATATGGAGAGAATAGAAAACGTGAATGAAGCCTTCACAGACCGACTACTAATTGAAATGGAGAGTATAGAAAACGTAAATGAAGAAGCCTTCACAGACCCATTACCAGTTGAAATGGAGAGAATAGAAAAGATGAACGAAGAAGCCTTCAAGATACATGAGCAAAAGATATTGCAGCTCCAATCTGACTATAAAAAGGAGTTTGAaaagttgagagaaaagtacaGGATGTTGCATCAGAAAGTTGATACTGAAGTAGCACTAAAAGGAATGGAGCTTGAGACAAAATGTAAATTAGTGTTAAGGAATAAGGTATTAGCTGAAGTTTGGATCCATAATCTTGATAGTTGTGAAAGAGCTGTTGTGGCACAATGCACAGAACAAGGTATGGATCATGCATATGGTTCATATATTTGTTGA | 4893 | 0.381 | MNAETLVVDEDGGDACSRCNEGLTEYKDNAQANPHMKDKKGGGEVVCSNCMRGGVLLCCCGKGCQRRYHPSCVDPPLNYIPLGFWHCIWCIKKKIELGVHSVSEGVKSILDSREVVSNNRVMQREYFVKYQGLAHAHNRWIPESKMLLEAPKLLAKFKRELQMPNYQVTRWKRDWSIPHRLLLKREIILSKQNDQHFDGHGDNDSICRYEWLVKWTGLGYDNITWELDDASFLTAPEGMKLIDDYERRCKRADRLSKNHFEANEERKASFAELSELPSGDSPGYDNQHLSYVNKLRMCWHKGQSAVIVDDHIDQERVMKVILFILSLNCNVKRPFLIISTSTALSVWEAEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEDDGILFQILLSSADIIVEDLHALRCIPWEAIIIDECQRSRILGQLDNIKILKAEMRLLLVNGQIKEDRADYIKLLSFLKSGHHGSNIAQMETYFSDSISTLKSQLEKYVVFKCKSGSTRFVEYWVPACLSNLQLEQYCSMLLSNLMLLCSGQKSASVDTLHDLIISMRKCCDHPYLVNPTLHGFVTKGLPVEKHLDIEIKASGKLQLLEKILLEARSRGLRVLIVFQSTCGSRSIGNILDDVLCQRFGKDCYVRYDRGYTPKTKQAALDTFNDKESGKFVFLMDNRACLSSVKLSSVDTVILFDSDLDPQNDLRGLQRMSISSQFKQFTVFRLYTYFTVEEKVLMLAKEGIALDINARLISQSTYHTLLKWGTCYLFNKLDDLHASATFVSDPDIADQSILPDVICELSSQLACSADDTDCHGWSFISRIQQNGGEYARSILLLGERIMKKLGSEPCSFSWSDLEGRHPRWKFLSVSSQRIRKTVRHFDHILKESECENDTFIGKRTASEDNVDPNRLNVSKDNVDPRRREVSKDNFDPTWRKLTEDIVDPKRRKVSKDVVETNGRKVSNHAIDPKTRKVSNDIVCLKGRKMSKNIVDSKYRKTRLKSKKNPSVVNRASKSNGNSNGLSNVLDSTMHPLTNETTGATATNMQFSEKNKLLDIPNNIKFLPKPDISGLCDILHFSKNVKAVAVRILEHIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHKIDRKDSLALAKLHLNFDCKEEEATDVYSELWKHEKDFSICLQSGLCVEKCNINCASDSEMPELNDLAEGNQKDFLGTCVSKLVKSVTNERDLQMKSPTTVVSQDQTCTHKICLSPKTPGSFPVEADAISMESGSEDDRMNAMTLITAEDSSLDPWSHDVNPVTGSLERQSPVRSTDITQSDGKVSEGPQILVNEVVAIDNAMNMSTHPVQLDSVETDAATCISTAVPEVRQWYSVMSPVCGESTAPEFAETTLPYMQPSHANLWSLPQMAMSAIPSFSEHRSANTVMPPDDIFYHSSEDHCYIDEAEVILEAPNDFVEPANSSFVSPVILQPFTSVLVNENTTHVPDSITIPGYVNSDYFQDHSVTSEMSHLAYPGPLLGDMERIENVNEAFTDRLLIEMESIENVNEEAFTDPLPVEMERIEKMNEEAFKIHEQKILQLQSDYKKEFEKLREKYRMLHQKVDTEVALKGMELETKCKLVLRNKVLAEVWIHNLDSCERAVVAQCTEQGMDHAYGSYIC | 1630 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g1012 | 1630 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 41 | 99 | IPR013083 | - | |
Ssu4g1012 | 1630 | PANTHER | HELICASE PROTEIN MOM1-LIKE ISOFORM X1 | 1497 | 1600 | - | - | |
Ssu4g1012 | 1630 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 502 | 734 | IPR027417 | - | |
Ssu4g1012 | 1630 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 1497 | 1600 | - | - | |
Ssu4g1012 | 1630 | Coils | Coil | 1552 | 1572 | - | - | |
Ssu4g1012 | 1630 | SUPERFAMILY | Chromo domain-like | 63 | 166 | IPR016197 | - | |
Ssu4g1012 | 1630 | Gene3D | - | 501 | 735 | IPR027417 | - | |
Ssu4g1012 | 1630 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 14 | 1153 | - | - | |
Ssu4g1012 | 1630 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 104 | 160 | IPR000953 | - | |
Ssu4g1012 | 1630 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 588 | 753 | IPR001650 | - | |
Ssu4g1012 | 1630 | Gene3D | - | 288 | 500 | IPR038718 | - | |
Ssu4g1012 | 1630 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 322 | 464 | IPR027417 | - | |
Ssu4g1012 | 1630 | SMART | PHD_3 | 46 | 91 | IPR001965 | - | |
Ssu4g1012 | 1630 | ProSitePatterns | Zinc finger PHD-type signature. | 16 | 90 | IPR019786 | - | |
Ssu4g1012 | 1630 | SMART | chromo_7 | 103 | 162 | IPR000953 | - | |
Ssu4g1012 | 1630 | SMART | chromo_7 | 174 | 250 | IPR000953 | - | |
Ssu4g1012 | 1630 | MobiDBLite | consensus disorder prediction | 992 | 1010 | - | - | |
Ssu4g1012 | 1630 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 106 | 159 | IPR023780 | - | |
Ssu4g1012 | 1630 | CDD | SF2_C_SNF | 578 | 700 | - | - | |
Ssu4g1012 | 1630 | Pfam | SNF2-related domain | 318 | 557 | IPR000330 | GO:0005524|GO:0140658 | |
Ssu4g1012 | 1630 | Gene3D | - | 1522 | 1603 | - | - | |
Ssu4g1012 | 1630 | MobiDBLite | consensus disorder prediction | 985 | 1010 | - | - | |
Ssu4g1012 | 1630 | MobiDBLite | consensus disorder prediction | 889 | 914 | - | - | |
Ssu4g1012 | 1630 | Gene3D | - | 105 | 161 | - | - | |
Ssu4g1012 | 1630 | PANTHER | HELICASE PROTEIN MOM1-LIKE ISOFORM X1 | 14 | 1153 | - | - | |
Ssu4g1012 | 1630 | ProSiteProfiles | Zinc finger PHD-type profile. | 44 | 93 | IPR019787 | - | |
Ssu4g1012 | 1630 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 183 | 257 | IPR000953 | - | |
Ssu4g1012 | 1630 | Gene3D | - | 168 | 248 | - | - | |
Ssu4g1012 | 1630 | MobiDBLite | consensus disorder prediction | 1273 | 1295 | - | - | |
Ssu4g1012 | 1630 | CDD | CD_CSD | 106 | 159 | - | - | |
Ssu4g1012 | 1630 | SUPERFAMILY | Chromo domain-like | 201 | 248 | IPR016197 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g1012 | Ssu-Chr4 | 16203633 | 16236918 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Ssu4g1012 | SNF2_N | 2.8e-07 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g1012 | - | K11643 | gmx:100813574 | 2286.92 |