Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1012 ATGAATGCTGAGACTCTTGTTGTGGATGAAGATGGAGGGGATGCCTGTTCTAGGTGCAACGAGGGTTTGACTGAATATAAAGATAATGCACAAGCAAATCCTcatatgaaagataaaaaaggagGCGGGGAAGTTGTATGTTCCAATTGCATGCGTGGTGGAGTACTTCTATGTTGCTGTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTGTGGATCCTCCTCTCAATTACATTCCTTTGGGGTTTTGGCACTGTATCTGgtgcattaagaaaaaaatagagctTGGGGTGCATTCTGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCAAACAATAGAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAATCAAAAATGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAGTTTAAGAGGGAACTGCAGatGCCAAATTACCAAGTTACCAGGTGGAAAAGAGATTGGAGTATACCTCACCGCTTGCTGCTAAAAAGggaaattatattatcaaaacaaaatgatcAACATTTTGATGGGCATGGTGACAATGATTCAATTTGCCGTTATGAGTGGCTTGTCAAATGGACCGGTCTTGGTTATGATAATATTACGTGGGAGTTAGATGATGCTTCATTTTTGACGGCACCTGAAGGCATGAAACTCATAGATGATTATGAACGTCGTTGCAAGAGAGCGGATAGACTgtcaaaaaatcattttgaagcTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTATCAGAGTTGCCGTCTGGGGATTCACCAGGATATGATAACCagcatttgagttatgtgaacAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATTGTAGATGATCACATTGACcagGAGCGGGTTATGAAGGtgattttgtttatattatctttGAATTGTAATGTGAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAGCAGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAGAGATGTAAGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGATGATGGGATCttatttcaaatattgttaTCATCTGCTGATATTATTGTTGAGGACTTACATGCACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCGATCCAGAATTTTAGGACAACTTGACAATATTAAGATTCTTAAAGCTGAAATGAGGCTCCTTCTTGTTAATGGACAAATCAAGGAAGATCGAGCTGATTATATCAAACTGCTTTCATTCCTCAAGTCTGGACATCATGGGTCAAACATTGCTCAAATGGAAACTTATTTCTCTGATAGCATTTCCACTTTGAAGAGCCAATTGGAAAAATATGTTGTGTTTAAATGCAAATCAGGTTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCCAATTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAGTCTGCCTCAGTTGATACCCTCCATGACCTTATTATCTCAATGAGGAAGTGCTGTGACCACCCTTATCTCGTGAACCCGACACTGCATGGTTTTGTTACTAAAGGTCTACCTGTTGAAAAGCATTTAGATATTGAAATAAAAGCAAGTGGAAAACTGCAACTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCGCGGGTTAAGGGTGTTAATAGTATTTCAGTCAACTTGTGGTTCTAGATCGATTGGAAATATTTTAGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGATAGAGGTTATACCCCCAAAACGAAGCAAGCTGCTTTAGACACATTTAATGACAAAGAAAGTGGAAAATTTGTCTTCTTGATGGATAACCGTGCTTGTCTCTCTAGCGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTGGATCCACAGAATGACTTAAGAGGCTTACAAAGGATGTCTATCAGCTCACAGTTCAAACAGTTTACAGTTTTCAGATTGTACACATATTTCACTgttgaagaaaaggttttaaTGCTTGCAAAAGAGGGTATAGCTCTTGACATCAATGCACGGTTGATTAGCCAGAGTACTTATCACACCCTGCTAAAATGGGGTACCTGCTATCTGTTCAATAAGCTTGATGACTTACATGCCAGTGCAACCTTTGTTTCTGATCCAGATATCGCTGATCAGTCAATTCTACCTGATGTAATCTGTGAATTATCATCCCAATTGGCTTGTAGTGCTGATGATACTGATTGTCATGGATGGTCATTCATATCAAGAATACAGCAGAATGGAGGGGAATATGCGAGGAGCATTTTATTGCTAGgagaaagaataatgaagaaatTGGGCAGTGAGCCATGTTCTTTTTCCTGGAGTGATCTTGAAGGAAGGCATCCTCGATGGAAATTTTTGTCTGTTTCATCTCAGAGGATCAGGAAAACAGTCAGACATTTTGATCACATACTAAAAGAATCTGAATGTGAAAATGATACCTTCATAGGAAAGAGGACAGCATCGGAGGATAATGTTGATCCCAACAGGTTGAATGTTTCCAAGGATAATGTTGATCCTAGGAGGAGAGAAGTGTCCAAGGATAATTTTGATCCTACGTGGAGGAAACTGACTGAGGATATCGTTGACCCCAAGAGGAGGAAAGTGTCCAAGGATGTTGTTGAAACAAATGGGAGGAAAGTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTCCAATGATATTGTTTGTTTGAAGGGCAGGAAAATGTCCAAGAATATTGTTGATTCCAAATATCGGAAAACAAGGTTGAAGAGCAAGAAGAATCCAAGTGTTGTCAATAGAGCAAGTAAATCAAATGGTAATTCAAATGGTTTGTCTAATGTACTTGATTCCACAATGCATCCTTTGACCAATGAAACTACAGGAGCAACTGCAACAAACATGCAATTTTCAGAGAAAAACAAACTGCTTGACATAccaaataacatcaaattctTGCCAAAGCCAGATATATCAGGTCTTTGTGACATTCTACATTTTTCGAAAAATGTCAAGGCTGTTGCCGTGAGGATTCTTGAGCACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCGGCTTCTTTGTTGAAACACAAGATTGATAGGAAGGATTCACTCGCTCTTGCAAAACTGCACTTGAATTTCGATTGCAAGGAAGAGGAAGCCACCGATGTTTACTCAGAACTGTGGAAGCATGAGAAggatttttcaatttgtttacaaaGTGGACTTTGTGTTGagaaatgtaatataaattgTGCTTCAGACTCTGAGATGCCTGAGCTGAATGATTTGGCAGAGGGGAACCAGAAGGATTTTCTGGGTACTTGTGTTTCAAAACTTGTGAAATCTGTCACAAATGAACGTGATCTTCAAATGAAATCTCCCACAACAGTGGTTTCACAAGACCAGACTTGTActcataaaatttgtttatctcCAAAGACACCCGGTAGTTTTCCAGTGGAAGCAGATGCTATCTCCATGGAATCTGGCTCAGAAGATGACAGAATGAATGCTATGACCTTAATAACAGCAGAAGATTCATCCCTTGATCCCTGGAGTCATGATGTCAACCCTGTTACAGGTTCTTTGGAAAGACAGAGTCCTGTTAGAAGTACAGATATTACACAATCTGATGGCAAAGTATCTGAAGGTCCTCAAATTTTAGTGAATGAAGTGGTTGCTATTGACAATGCTATGAATATGTCTACTCATCCTGTGCAGCTTGACAGTGTTGAGACAGATGCTGCAACTTGCATTAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAGTGTAATGAGTCCTGTATGTGGTGAGTCAACGGCTCCGGAGTTTGCTGAGACTACCTTACCATATATGCAACCATCGCATGCAAATTTGTGGTCATTGCCTCAGATGGCAATGTCTGCTATTCCCTCTTTTTCGGAGCACCGTTCAGCTAATACTGTCATGCCTCcagatgatattttttatcatagtAGTGAGGATCATTGCTACATTGATGAGGCCGAAGTAATATTGGAAGCACCAAATGACTTTGTGGAACCAGCTAACTCTTCCTTTGTTTCACCTGTGATACTGCAACCCTTCACTAGTGTGCTCGTGAATGAAAATACGACACATGTACCCGACAGCATTACTATTCCTGGATATGTGAACAGTGATTATTTTCAAGATCACTCTGTGACTTCTGAAATGTCCCACCTTGCCTATCCAGGCCCACTACTGGGTGATATGGAGAGAATAGAAAACGTGAATGAAGCCTTCACAGACCGACTACTAATTGAAATGGAGAGTATAGAAAACGTAAATGAAGAAGCCTTCACAGACCCATTACCAGTTGAAATGGAGAGAATAGAAAAGATGAACGAAGAAGCCTTCAAGATACATGAGCAAAAGATATTGCAGCTCCAATCTGACTATAAAAAGGAGTTTGAaaagttgagagaaaagtacaGGATGTTGCATCAGAAAGTTGATACTGAAGTAGCACTAAAAGGAATGGAGCTTGAGACAAAATGTAAATTAGTGTTAAGGAATAAGGTATTAGCTGAAGTTTGGATCCATAATCTTGATAGTTGTGAAAGAGCTGTTGTGGCACAATGCACAGAACAAGGTATGGATCATGCATATGGTTCATATATTTGTTGA 4893 0.381 MNAETLVVDEDGGDACSRCNEGLTEYKDNAQANPHMKDKKGGGEVVCSNCMRGGVLLCCCGKGCQRRYHPSCVDPPLNYIPLGFWHCIWCIKKKIELGVHSVSEGVKSILDSREVVSNNRVMQREYFVKYQGLAHAHNRWIPESKMLLEAPKLLAKFKRELQMPNYQVTRWKRDWSIPHRLLLKREIILSKQNDQHFDGHGDNDSICRYEWLVKWTGLGYDNITWELDDASFLTAPEGMKLIDDYERRCKRADRLSKNHFEANEERKASFAELSELPSGDSPGYDNQHLSYVNKLRMCWHKGQSAVIVDDHIDQERVMKVILFILSLNCNVKRPFLIISTSTALSVWEAEFLHLAPSANLVVYKGNRDVRSGIRALEFFNEDDGILFQILLSSADIIVEDLHALRCIPWEAIIIDECQRSRILGQLDNIKILKAEMRLLLVNGQIKEDRADYIKLLSFLKSGHHGSNIAQMETYFSDSISTLKSQLEKYVVFKCKSGSTRFVEYWVPACLSNLQLEQYCSMLLSNLMLLCSGQKSASVDTLHDLIISMRKCCDHPYLVNPTLHGFVTKGLPVEKHLDIEIKASGKLQLLEKILLEARSRGLRVLIVFQSTCGSRSIGNILDDVLCQRFGKDCYVRYDRGYTPKTKQAALDTFNDKESGKFVFLMDNRACLSSVKLSSVDTVILFDSDLDPQNDLRGLQRMSISSQFKQFTVFRLYTYFTVEEKVLMLAKEGIALDINARLISQSTYHTLLKWGTCYLFNKLDDLHASATFVSDPDIADQSILPDVICELSSQLACSADDTDCHGWSFISRIQQNGGEYARSILLLGERIMKKLGSEPCSFSWSDLEGRHPRWKFLSVSSQRIRKTVRHFDHILKESECENDTFIGKRTASEDNVDPNRLNVSKDNVDPRRREVSKDNFDPTWRKLTEDIVDPKRRKVSKDVVETNGRKVSNHAIDPKTRKVSNDIVCLKGRKMSKNIVDSKYRKTRLKSKKNPSVVNRASKSNGNSNGLSNVLDSTMHPLTNETTGATATNMQFSEKNKLLDIPNNIKFLPKPDISGLCDILHFSKNVKAVAVRILEHIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHKIDRKDSLALAKLHLNFDCKEEEATDVYSELWKHEKDFSICLQSGLCVEKCNINCASDSEMPELNDLAEGNQKDFLGTCVSKLVKSVTNERDLQMKSPTTVVSQDQTCTHKICLSPKTPGSFPVEADAISMESGSEDDRMNAMTLITAEDSSLDPWSHDVNPVTGSLERQSPVRSTDITQSDGKVSEGPQILVNEVVAIDNAMNMSTHPVQLDSVETDAATCISTAVPEVRQWYSVMSPVCGESTAPEFAETTLPYMQPSHANLWSLPQMAMSAIPSFSEHRSANTVMPPDDIFYHSSEDHCYIDEAEVILEAPNDFVEPANSSFVSPVILQPFTSVLVNENTTHVPDSITIPGYVNSDYFQDHSVTSEMSHLAYPGPLLGDMERIENVNEAFTDRLLIEMESIENVNEEAFTDPLPVEMERIEKMNEEAFKIHEQKILQLQSDYKKEFEKLREKYRMLHQKVDTEVALKGMELETKCKLVLRNKVLAEVWIHNLDSCERAVVAQCTEQGMDHAYGSYIC 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1012 1630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 99 IPR013083 -
Ssu4g1012 1630 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1497 1600 - -
Ssu4g1012 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 734 IPR027417 -
Ssu4g1012 1630 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1497 1600 - -
Ssu4g1012 1630 Coils Coil 1552 1572 - -
Ssu4g1012 1630 SUPERFAMILY Chromo domain-like 63 166 IPR016197 -
Ssu4g1012 1630 Gene3D - 501 735 IPR027417 -
Ssu4g1012 1630 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 14 1153 - -
Ssu4g1012 1630 ProSiteProfiles Chromo and chromo shadow domain profile. 104 160 IPR000953 -
Ssu4g1012 1630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 588 753 IPR001650 -
Ssu4g1012 1630 Gene3D - 288 500 IPR038718 -
Ssu4g1012 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 464 IPR027417 -
Ssu4g1012 1630 SMART PHD_3 46 91 IPR001965 -
Ssu4g1012 1630 ProSitePatterns Zinc finger PHD-type signature. 16 90 IPR019786 -
Ssu4g1012 1630 SMART chromo_7 103 162 IPR000953 -
Ssu4g1012 1630 SMART chromo_7 174 250 IPR000953 -
Ssu4g1012 1630 MobiDBLite consensus disorder prediction 992 1010 - -
Ssu4g1012 1630 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 159 IPR023780 -
Ssu4g1012 1630 CDD SF2_C_SNF 578 700 - -
Ssu4g1012 1630 Pfam SNF2-related domain 318 557 IPR000330 GO:0005524|GO:0140658
Ssu4g1012 1630 Gene3D - 1522 1603 - -
Ssu4g1012 1630 MobiDBLite consensus disorder prediction 985 1010 - -
Ssu4g1012 1630 MobiDBLite consensus disorder prediction 889 914 - -
Ssu4g1012 1630 Gene3D - 105 161 - -
Ssu4g1012 1630 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 14 1153 - -
Ssu4g1012 1630 ProSiteProfiles Zinc finger PHD-type profile. 44 93 IPR019787 -
Ssu4g1012 1630 ProSiteProfiles Chromo and chromo shadow domain profile. 183 257 IPR000953 -
Ssu4g1012 1630 Gene3D - 168 248 - -
Ssu4g1012 1630 MobiDBLite consensus disorder prediction 1273 1295 - -
Ssu4g1012 1630 CDD CD_CSD 106 159 - -
Ssu4g1012 1630 SUPERFAMILY Chromo domain-like 201 248 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1012 Ssu-Chr4 16203633 16236918 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu4g1012 SNF2_N 2.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1012 - K11643 gmx:100813574 2286.92