Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1009 ATGAAGGGGAAGTTTCTGAGAGGGCGCCTTAACAAGTGGAAGAAAATGGGGAGTCGAGTAACCCATTGTGCTGCCTACGGTCACTGCTGTGAATGGGAACTGTGGTCATCCATGCATGAAGGGGACTCTATCCCCAACGATGTGCCAAAGGGTCACTTGGTTGTGTACGTGGGAGAGCACCGTAAGAGATATGTCATCAAGATCACGTTACTCAACCATCCACTCTTCAAGACCTTGCTGGATCAAGCTCAGGATGAGTATGATTTCATTGCAGATTCAAAGCTCTATATTCCTTGCACTGAGCATCTTTTCCTCACTGTCCTGCGCCGTGCAAGCTCCCCACAGAACGAACGAGTGTTTGTGTGTGTCTGA 372 0.4892 MKGKFLRGRLNKWKKMGSRVTHCAAYGHCCEWELWSSMHEGDSIPNDVPKGHLVVYVGEHRKRYVIKITLLNHPLFKTLLDQAQDEYDFIADSKLYIPCTEHLFLTVLRRASSPQNERVFVCV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1009 123 Pfam Auxin responsive protein 25 109 IPR003676 GO:0009733
Ssu4g1009 123 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 3 122 - -
Ssu4g1009 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 122 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1009 Ssu-Chr4 16159019 16159390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1009 31 108 Calmodulin-binding Proteins AT4G34750 41.772 6.16e-19 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1009 K14488 - gmx:100793017 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1009 4 16159019 16159390 Ssu4g1009 4 16159019 16159390 ECH
Ssu4g1009 4 16159019 16159390 Ssu7g2456 7 47790731 47791057 PCT