Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1006 ATGAAGTGTTTTTCATTCTCCTATGGAGAGAAGAGAGATGAGCCAAAAGGCTTGCAGTCGACGTCGGGTCGGTCAGACCATTCCACATGTGTTGAGGCCGAGGTTAGAAGATCTGGTTCTGAGTTAAATTCTCAGGATGTTTCAGACAATGGCAGCACAGAATCCCTCAGGAGGAATGCAATTCCCAGTTTGTCCCAGAGGCCCAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGCTCTGTTATGATTGGAGAGGGCGGGTTTGGGTGTGTCTACCTGGGATTGATTAGAAGTGTAGAGGACTCCTCCAGAAGAATTGAAGTTGCAGTTAAGCAGCTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTTCTGGGGATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGATCAGAGACTCCTCTACCATGGAGTAGGAGATTAAAAATAGCTCGAGATGCAGCTCGTGGGTTAACATACCTGCACGAGGAAATGGAATTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCGACGGCGGTTGTAGGAACAATGGGGTATGCAGCTCCTGAATATGTTCAAACTGGTCGTCTAACATCAAAGAATGATGTATGGAGCTACGGTGTCTTCCTCTATGAACTCATTACTGGTAGGCGCCCTTTAGACCGAAACCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGATAAAGCCATACCTATCAGAtgggaagaaatttcaacttATAGTAGATCCGAGACTTGATAAGAAACAAGTCTTCAAGTCAGCCCAGAGACTTGCTATGATAGCTAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGCGAGGTATTGGAAATGGTGAATGGAATGGTAGAATCTTCTTCATCCGGTTCTAGTCCACAGTTGCCCTTGAGGAGGGTGGCAACAGTGGAAGCTTCCCAGGATACCGAAACAAAAAACAAGAAACGGACCATGGATCAGAAGCCTGGAGAAAGTAACTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGCTGA 1284 0.4431 MKCFSFSYGEKRDEPKGLQSTSGRSDHSTCVEAEVRRSGSELNSQDVSDNGSTESLRRNAIPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIRSVEDSSRRIEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLPWSRRLKIARDAARGLTYLHEEMEFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIKPYLSDGKKFQLIVDPRLDKKQVFKSAQRLAMIANRCLVKNPKNRPKMSEVLEMVNGMVESSSSGSSPQLPLRRVATVEASQDTETKNKKRTMDQKPGESNWFVRMWRPKLVRTC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1006 427 MobiDBLite consensus disorder prediction 1 62 - -
Ssu4g1006 427 Gene3D Transferase(Phosphotransferase) domain 1 172 384 - -
Ssu4g1006 427 Pfam Protein tyrosine and serine/threonine kinase 91 365 IPR001245 GO:0004672|GO:0006468
Ssu4g1006 427 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Ssu4g1006 427 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Ssu4g1006 427 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1006 427 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1006 427 PANTHER OS01G0588500 PROTEIN-RELATED 12 422 - -
Ssu4g1006 427 CDD STKc_IRAK 92 370 - -
Ssu4g1006 427 PANTHER KINASE 1B 12 422 - -
Ssu4g1006 427 Gene3D Phosphorylase Kinase; domain 1 66 171 - -
Ssu4g1006 427 MobiDBLite consensus disorder prediction 390 409 - -
Ssu4g1006 427 MobiDBLite consensus disorder prediction 38 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1006 Ssu-Chr4 16124238 16127204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1006 1 378 Glycoside Hydrolase AT3G07070 40.979 3.02e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu4g1006 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1006 - - gsj:114400704 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1006 4 16124238 16127204 Ssu4g1006 4 16124238 16127204 ECH
Ssu4g1006 4 16124238 16127204 Ssu7g2453 7 47734025 47736709 PCT