Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0998 ATGccactatatatatatccagCATTGCATGTAAGAATTTCCAAAAGAAACGTGTTCAGGTTACTATTTGTTCCTCTGAGCATGGGTAAAACATTTAGTGGCAGTTCTTGGGGATTTTGGATGGCAGGGTTTGGAGTACTGGTGCCCATGATGAGGAAACTACAGACCACCTTCTCACGTTCAAAAGGGGTGAAGCAGGGCCATTTTGTGGTGATTGCAACCCAAGGCTGGAAACCAGAGCGATTCTTTATTGAATTGGGATATTTAGATCACCCTGACTTTGTGAAGCTGTTAAAGCAAGCTGAAGAAGAGTTCGGGTTCTCTCAGGTAGGAGCACTTGCAATTCCTTGCGAACCAGATGACCTGAAGAGAATCATTGGaaggaaaaagaatagaaaCGAGGGTATTACCTGTTGGGTTAAAGGGATAAGAGTTGCATGA 441 0.4082 MPLYIYPALHVRISKRNVFRLLFVPLSMGKTFSGSSWGFWMAGFGVLVPMMRKLQTTFSRSKGVKQGHFVVIATQGWKPERFFIELGYLDHPDFVKLLKQAEEEFGFSQVGALAIPCEPDDLKRIIGRKKNRNEGITCWVKGIRVA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0998 146 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 137 IPR003676 GO:0009733
Ssu4g0998 146 PANTHER SMALL AUXIN-UP RNA-RELATED 39 137 - -
Ssu4g0998 146 Pfam Auxin responsive protein 59 126 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0998 Ssu-Chr4 15973990 15974430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0998 57 135 Calmodulin-binding Proteins AT2G24400 39.241 6.81e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0998 - K14488 gmx:100795119 206.068