Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0994 ATGTCAAAAGATAGTGAGGAGATAAAAACGATTGAGCAGTGGAAATGGTCCGAGATGCAAGGCCTTGAGCTCGTTTCTGATGCTGCACCTTCACAGCAACACCAACTTCCGAGGGAAATGGACACTTGTGCTTCTGAACCAcccaacagcaacaacaacaaagatgCTGCGGTTACCAGTAACAACAAGGCAGAGAGTGTTGCCTCTGTTGGGTTCGGAGAGCTTTTCAGATTCGCTGATGGCTTGGATTACCTTCTCATGGGAATTGGAACGCTTGGAGCAGTTGTGCACGGTTGTTCTCTGCCTCTCTTTCTTCGCTTCTTCGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGACGTGGACAGGATGACGAGGGAAGTGGTCAAGTATGCATTTTACTTCTTGGTGGTGGGGGCTGCTATATGGGCATCTTCATGGGCAGaGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCAAGATGAGAATCAAGTATCTGGAAGCTGCGTTGAACCAGGACATTCAGTTCTTTGACACCGAGGTTCGGACATCCGATGTTGTTTTTGCCATCAACACTGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACTTTTTTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCACTGGTCACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCGCCACCTTGGCCAAGCTCTCTGGCAAGAGCCAGGAGGCTCTTTCTCAAGGTGGCAACATTGTGGAACAGACGGTTGCGCAAATCCGGGTGGTGCTGGCCTTTGTAGGGGAGTCCAGGGCATTGCAGGCCTATTCATCAGCCTTGAGGGTTGCCCAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGGATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGCTATCTGGTTCGGCACCACGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCAGTTATGATAGGGGGATTGGGTTTAGGGCAATCTGCACCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCCGGAATAGATCGAAACAGTGAATCTGGCATGGAACTAGAGACAGTTACCGGGCTAGTGGAGCTGAAAAATGTGGACTTTTCTTACCCATCTAGGCCAGAGGTTCGGATCCTCAATGACTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGCGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGATCCAACTTCAgGACAAGTTCTGCTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGCTGAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCTGCCTTGTTTGCTACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAACGCCCATTCCTTCATCATTAAACTTCCTGAAGGCTATGAAACCCAGGTTGGAGAAAGAGGGCTGCAACTTTCTGGAGGACAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAGAACCCTGCAATTCTTCTCCTAGACGAGGCAACAAGTGCATTGGACTCAGAGTCAGAAAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTGATTGCCCATCGCCTCTCCACAATTCGCAAAGCTGACCTTGTGGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAACTCTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCCTCAAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCACGTAGGCTATCTGATTTCTCTACATCTGATTTTACTCTGTCCCTTGATACATCACATCCAAGTTACAGGCTCGAAAAGCTTGCTTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTACGCTTTAATTGGCTCCATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGCGAAATAGAAAAATACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACAAAACGTGTGAGGGAGAAAATGCTGACGGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTAGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCAGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTATTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTAGCAGGTGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCACCTCCAATCTCCAAGCTCCACTACAGCGTTGTTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGCGTAGCTCAATTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTGGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCGAATGGTGCTGCTGAAACTTTAACACTGGCTCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTCTTTGATCTCCTTGACCGCAGAACTGAAATTGAGCCTGATGATCAAGATGCCACTCCTGTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTAGACTTCTCTTATCCAGCTCGCCCAGATATGCCAGTTTTTCGTGACCTCAGTCTTCGTGCCAGGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATCAGGAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCTGTGGTACCTCAGGAGCCTTGCTTGTTTGCTACAACTATTTATGAAAACATTGCTTATGGTCATGACTCAGCTACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCAGACGGATACAAAACATTTGTTGGGGAGAGAGGCGTTCAACTGTCTGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTTGTGAGGAAGGCAGAGCTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCCGAATCTGAGAGATCTGTTCAGGAGGCTCTAGACCGCGCCTCCTCAGGAAAGACAACTATTATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAATCTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGTTCCCATTCACAGTTGTTGAAAAATCACCCGGATGGGATTTATGCGCGCATGATTCAGTTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCTGGTTCAAGTTCTTCAACGAGACCAAAAGATGAGGAAAGAGAAGGCTAG 3999 0.4631 MSKDSEEIKTIEQWKWSEMQGLELVSDAAPSQQHQLPREMDTCASEPPNSNNNKDAAVTSNNKAESVASVGFGELFRFADGLDYLLMGIGTLGAVVHGCSLPLFLRFFADLVNSFGSNANDVDRMTREVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFFSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLAKLSGKSQEALSQGGNIVEQTVAQIRVVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGMELETVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFTLSLDTSHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPARPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDEEREG 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0994 1332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 87 1309 IPR039421 -
Ssu4g0994 1332 CDD ABC_MTABC3_MDL1_MDL2 411 650 - -
Ssu4g0994 1332 Gene3D - 1057 1312 IPR027417 -
Ssu4g0994 1332 Gene3D ABC transporter type 1, transmembrane domain 134 1039 IPR036640 GO:0005524|GO:0016021
Ssu4g0994 1332 Pfam ABC transporter transmembrane region 744 1013 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0994 1332 Pfam ABC transporter transmembrane region 88 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0994 1332 MobiDBLite consensus disorder prediction 27 60 - -
Ssu4g0994 1332 ProSitePatterns ABC transporters family signature. 1205 1219 IPR017871 GO:0005524
Ssu4g0994 1332 Gene3D - 409 674 IPR027417 -
Ssu4g0994 1332 Pfam ABC transporter 1085 1233 IPR003439 GO:0005524
Ssu4g0994 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1305 IPR027417 -
Ssu4g0994 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1302 IPR003439 GO:0005524
Ssu4g0994 1332 CDD ABC_6TM_Pgp_ABCB1_D2_like 732 1048 - -
Ssu4g0994 1332 MobiDBLite consensus disorder prediction 1313 1332 - -
Ssu4g0994 1332 CDD ABC_6TM_Pgp_ABCB1_D1_like 87 384 - -
Ssu4g0994 1332 SUPERFAMILY ABC transporter transmembrane region 75 395 IPR036640 GO:0005524|GO:0016021
Ssu4g0994 1332 SUPERFAMILY ABC transporter transmembrane region 730 1050 IPR036640 GO:0005524|GO:0016021
Ssu4g0994 1332 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 87 1309 - -
Ssu4g0994 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 89 376 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0994 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 650 IPR027417 -
Ssu4g0994 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 743 1030 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0994 1332 SMART AAA_5 438 624 IPR003593 -
Ssu4g0994 1332 SMART AAA_5 1093 1285 IPR003593 -
Ssu4g0994 1332 Pfam ABC transporter 429 578 IPR003439 GO:0005524
Ssu4g0994 1332 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524
Ssu4g0994 1332 CDD ABC_MTABC3_MDL1_MDL2 1066 1305 - -
Ssu4g0994 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 411 647 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0994 Ssu-Chr4 15862074 15868414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0994 40 1327 Calmodulin-binding Proteins AT2G36910 87.975 0.0 2319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0994 K05658 - gmx:100814667 2439.84