Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0993 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCTGAAGAAGATGCAAAGCTAAAGGAGTACATAGAGCAACATGGCACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGACTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCACGGCCAGTTCTCTGATGCAGAGGATAAAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCttaagaagaaaatgatggCCATGAATCCTTCACCAGAGAGGAAGCCTCAACAAATTACCCTTTTGTCCATCCTTCAAAGCTCAACATCATCTTCACCATGGTCATTCAGAGACAGCAACAACTCATACTACCACCCCCAAGGGTCTTTCACAGGCTCCGGGTCCTTTTCCTACTCGTCAAGTCTTGCGAGTGGAATTAACTCTTCTGCTTCAGCTGATTCCTTTTTTCAAGCACAAGAGAGTTTCATGGAACCCACTCAGAAGTGCCAATTCAAAGATAGCAGCAATAGCATCTTTGTGTTTGGGGGTGAAGCCACAGCCACTAGTTGCAGCTCTTCTGATGGGAGCTGCAACAACCAGATCAGCCATGTCATAGACCCAGAGTTTGGATATGGAGAAGGGTGTGCTAATCACCTCTACAGTGGGATGGAAGATACTACTCAGAAGTTGATGTTCTCCAATGCTGGTGGTAGTGTTAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACATAATCCATTGGATTATGGTGTAGAGGAAATCAAACAACTAATTAGCACTAATAACAGTTGCAACAACTTTTTGTTTGATGAGAAGAAGACAGAGGGAAGGGTCATGTACTACTGA 966 0.4369 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSPERKPQQITLLSILQSSTSSSPWSFRDSNNSYYHPQGSFTGSGSFSYSSSLASGINSSASADSFFQAQESFMEPTQKCQFKDSSNSIFVFGGEATATSCSSSDGSCNNQISHVIDPEFGYGEGCANHLYSGMEDTTQKLMFSNAGGSVSGWTDKQNGLWEHNPLDYGVEEIKQLISTNNSCNNFLFDEKKTEGRVMYY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0993 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Ssu4g0993 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu4g0993 321 Gene3D - 7 68 - -
Ssu4g0993 321 SMART sant 13 64 IPR001005 -
Ssu4g0993 321 SMART sant 67 115 IPR001005 -
Ssu4g0993 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Ssu4g0993 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu4g0993 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu4g0993 321 CDD SANT 16 62 IPR001005 -
Ssu4g0993 321 PANTHER TRANSCRIPTION FACTOR RAX3 1 305 - -
Ssu4g0993 321 Gene3D - 70 133 - -
Ssu4g0993 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu4g0993 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu4g0993 321 PANTHER OS09G0431300 PROTEIN 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0993 Ssu-Chr4 15830781 15832214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0993 1 127 MYB Transcription Factor Family AT5G57620 81.102 7.51e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu4g0993 Myb_DNA-binding 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0993 K09422 - gmx:778084 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0993 4 15830781 15832214 Ssu4g0993 4 15830781 15832214 ECH
Ssu4g0993 4 15830781 15832214 Ssu7g2424 7 47257031 47258361 PCT