Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0987 ATGGCGTCTCCGTTTGATTTACACGACTACGACGTAAACGAAGTCGCAGCGGCACATCTCATGGGAGGCCCCGCAGATTATGGAATCACCGACGacgaagaggaggaggaggacgaAGACGAAGacgaagaggaggaggaggaggacgaCGACGACGAAGACGAAGAGTACGTCCCCCCTGTGGCGTCTCCTAGGGCTTCGCACGACGCACCTCGTATCCTTACAACTAATAGCGTAATCGTCATCCCCGACGAATCGCAGAATTTCGTGGAAGAGGAGGGAAACAAACGCCGCAGAACCGAAGGTGGCGAGGCTTCCTGTTCCTTCGCAATTGACGGTAGCCAAGGGAACGAGTGGAATCGCACCGACATTGACGGTCTCTTTTGCCCTATTTGCATGGACGTTTGGACCAATAACGGCGAGCACCACATCTGTTGTCTTCCTTGTGGACACATTTATGGCATGTCTTGCATCAAAAGATGGCTTCAACAGCGCAAAAATTCCGGGAAGTGCCCTCAATGTAATAGGAAATGTTCGTTGAAGGATGCGAGGAAACTCTATGCCTCTCGAGTGGTTGCCGTCGATGAAGAATCTCAGAAGAGAATTCGGTCACTTGAGGCCAAATGTTCTGCCCTTGAAAGTAAGGGCAGTGATTGGCACAAGAAAGAAGCCGGATGGAAGAAGAGAGAAGCTGCATTGAATCTTCAAGTTCAGAAGCTTACAGAGAGAAACACTTATTTGGAGCAGCTGCTATTAGATATGCAGAGCAGGCAATCTGCATCAGTAATTGGCAATGGAAACTCTCAATGGAGATGTGTATCTGAGCACAGCTTCTTTGGCCCAAAGTACCACGGAAAGGGATCCATTTGCAATTTTGAATTTCAGAAAGCGTTTGATCTAGATGGTGCACGTGTTTTTGATATGGACAtttctaatcaaattttattgattgcACAAAAGCCAAAGGCAATAGGTGGAATGCCCTTGCTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGATATCTTACTGCCTTCCGCTACAAATGTTGTTAAAGATCTACATATTTCTCCTTCGAATGGTAGCCTGGCCCTCTATTCTTCATTAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGCGGCAACCTTGTTATCAATTATGATCTACAGAATCCTGCTTGGTCTTGTTCATGGGATCTCAACAATTCACATTATGTATATGCTGGACTACAGAATGGTTCTATCTTAGTGTTTGATATGCGCCAAACTGCAGGACCTATGAAATCTTTAGTTGGGTTGACTAGCAACCCTGTGCATACTGTACATTCTCTTGCACAAACTTCAAGTCTTCCTTCTGGTGTTCAAACCATCCTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCGCTTATGGTTCCTGAAACTGGTAATCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACATTGTTGTTTCTTACCGACCGAAATTTGACATGTCGACGGATGTGCCTCTATCTCAACCATCGCCCACTCCTCTTACCTCTGGACACGGAGTACAGGGCACCCATGTCTTGTTCAATGGAATGGGCAGTCATCATTTCCAAATGGTGGGCTCTTCATATGCCAATGTAAGTAAAATTCGACtagcaaaatgtgtaattatgGACACAGAGAATCAGAGCAGATTGTTTGCATCTTGGGATGAAGTTACATGTGATTTGGTCTTGCATGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATGCCAGCTCTGGTCCGTGATCTTAGGTACTCACCTAGCCATGGAATACTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTCTATTCCAAACACTCGTGA 1908 0.4334 MASPFDLHDYDVNEVAAAHLMGGPADYGITDDEEEEEDEDEDEEEEEEDDDDEDEEYVPPVASPRASHDAPRILTTNSVIVIPDESQNFVEEEGNKRRRTEGGEASCSFAIDGSQGNEWNRTDIDGLFCPICMDVWTNNGEHHICCLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCSLKDARKLYASRVVAVDEESQKRIRSLEAKCSALESKGSDWHKKEAGWKKREAALNLQVQKLTERNTYLEQLLLDMQSRQSASVIGNGNSQWRCVSEHSFFGPKYHGKGSICNFEFQKAFDLDGARVFDMDISNQILLIAQKPKAIGGMPLLTKMSLMSPFEMQDILLPSATNVVKDLHISPSNGSLALYSSLGKKLSVLSLDSGNLVINYDLQNPAWSCSWDLNNSHYVYAGLQNGSILVFDMRQTAGPMKSLVGLTSNPVHTVHSLAQTSSLPSGVQTILSASAIGLCQWNIDSEERPLMVPETGNQGVCISLAYCPSSDDIVVSYRPKFDMSTDVPLSQPSPTPLTSGHGVQGTHVLFNGMGSHHFQMVGSSYANVSKIRLAKCVIMDTENQSRLFASWDEVTCDLVLHELPSFRVLQQFKMPALVRDLRYSPSHGILGCLSENTLQLFYSKHS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0987 635 Gene3D - 334 514 IPR015943 GO:0005515
Ssu4g0987 635 CDD mRING-C3HGC3_RFWD3 125 175 - -
Ssu4g0987 635 MobiDBLite consensus disorder prediction 18 72 - -
Ssu4g0987 635 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 31 630 - -
Ssu4g0987 635 Coils Coil 195 215 - -
Ssu4g0987 635 MobiDBLite consensus disorder prediction 28 57 - -
Ssu4g0987 635 PANTHER RFWD3 PROTEIN 31 630 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Ssu4g0987 635 SMART ring_2 129 174 IPR001841 -
Ssu4g0987 635 SUPERFAMILY WD40 repeat-like 350 630 IPR036322 GO:0005515
Ssu4g0987 635 SUPERFAMILY RING/U-box 120 181 - -
Ssu4g0987 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 238 IPR013083 -
Ssu4g0987 635 Pfam Ring finger domain 129 175 IPR001841 -
Ssu4g0987 635 Coils Coil 30 50 - -
Ssu4g0987 635 ProSiteProfiles Zinc finger RING-type profile. 129 175 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0987 128 180 C3H Transcription Factor Family AT1G51930 40.741 5.32e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0987 K15691 - gmx:100818898 870.152