Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0975 ATGCTCCAAACAACCTGCATTTTGCTACTCTCAGTTCTTAGTTCGTTTTCACCTCTTGCATCAGCAATGCTGAACCTAACTCTTCCCGGAGCACATCCAGACCCCGAAGCTGTTGCCCACGAAGTTCAtagGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGTTATCAGTGTCAGAGAAAGACGAGTCTTCGTGCCTAACGGGGAACCCGATCGATGATTGTTGGAAATGTGACCCAGATTGGCCCAATAACCGACAGAGGCTAGCTGACTGCGCCATTGGGTTTGGTCAGTACGCGAAGGGAGGGAAAGGTGGTGAATTTTACGTTGTTACTGACTCCACAGATGATGACGCTGTGAACCCAAAACCTGGCACGCTCAGATACGCAGTGATACAGAACGAGCCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAGCTCATTTTTAACAGTTATAAGACTATTGATGGACGCGGCGCGGATGTGCACATTGTGGGAGGAGGGTGCATTACTTTGCAGTATATAAGCAATGTCATCATACACAACATTCACATCCACCACTGTCATCCCTCAGGGAACACAAACGTTCGGTCAAGTCCGGAGCACTACGGATTTCGGACAGAATCAGACGGGGACGGGATATCGATATTCGGGTCGAAGGACTTATGGATCGACCACTGCACGCTGTCGCGGTGCAAGGACGGGCTGATAGACGCGGTGATGGGTTCGACGGGAATAACCATCTCCAACAACTACCTGTCCCACCACAACGAGGTGATGCTGCTGGGCCACAGCGACGACTACCTCCCGGACTCGGGAATGCAAGTGACCATCGCCTTCAACCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCGCGGTGCAGGAGGGGCTACATCCACGTCGTCAACAACGACTTCACGGAGTGGGAGATGTACGCCATAGGTGGCAGCGGCGAGCCCACCATCAACAGCCAGGGCAACCGCTACACCGCTCCCCGAAACCCCTTCGCCAAAGAGGTCACCAAGAGAGTCGACACCCAACAGTCCAGGTGGAAGGGCTGGAACTGGAGGTCCGAGGGTGACATCCTCCTCAACGGTGCCTTTTTCGTTGCTTCCGGGGAAGGACTTGAGGTTAAGTACGAGAAGGCCTACAGTGTCGAACCTAAGTCCGCTGATCGCATCTCTCTTCTCACCATCTTCGCTGGCGTTCTCGGTAATGCCagGGACAACAACCTCGGAATGTGGAGCAGAGGACCCGGTGATGACGCTACGGAGTCCGGCTTCGAATACACCGACGACATGGCCAGGACTGCCACAATCGTTGTGccgttttcttttcttctcttcttgtcTTACACGATACTGTTGGCGGTTATTCTATGA 1401 0.5203 MLQTTCILLLSVLSSFSPLASAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSEKDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSTDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDLWIDHCTLSRCKDGLIDAVMGSTGITISNNYLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYTAPRNPFAKEVTKRVDTQQSRWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRISLLTIFAGVLGNARDNNLGMWSRGPGDDATESGFEYTDDMARTATIVVPFSFLLFLSYTILLAVIL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Ssu4g0975 466 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Ssu4g0975 466 SMART amb_all 144 341 IPR002022 -
Ssu4g0975 466 PANTHER PECTATE LYASE 12-RELATED 1 426 - -
Ssu4g0975 466 Gene3D - 69 411 IPR012334 -
Ssu4g0975 466 SUPERFAMILY Pectin lyase-like 65 394 IPR011050 -
Ssu4g0975 466 Pfam Pectate lyase 153 329 IPR002022 -
Ssu4g0975 466 PANTHER PECTATE LYASE 18-RELATED 1 426 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0975 Ssu-Chr4 15595846 15599160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0975 1 466 Polysaccharide Lyase AT3G53190 74.419 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0975 K01728 - gmx:100775595 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0975 4 15595846 15599160 Ssu4g0975 4 15595846 15599160 ECH
Ssu4g0975 4 15595846 15599160 Ssu7g2468 7 48125341 48131908 PCT