Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0973 ATGGCGTGTCGCCGCATGATAAGGGTGAACATGAAAACAGGCATAAAGAATAGGGACTCGTTTGGTATGCTAGTATCCAAGACTAGCCTCACTTTAATGGAACCCCAGCTTTCAAGTGATGGATTTTCTCATCAACACCCCCTCGTTGATGGGTCTCCATCCGAAATCGGATGTGGGAATTACGGGTGCTCACACTATAAAAGGAGATGCAAGATCATAGCGCCCTGTTGCAATGAAATCTTCGATTGCAGACATTGTCATAATGAATCTAAGAATTCCATTGAAGTCGATCCTGTTAACCGGCATGACGTTCCTCGTCATGATGTGAAGAGGGTCGTCTGTTCCTTGTGTAGCACAGAGCAAAATGTTCAACAGATGTGCATTCACTGTGGTGCTTGCATGGGTAGATACTTCTGCTTCAAATGCAAATTTTTCGACGACGATGTATCAAAAAATCAATACCATTGTGATGAATGTGGCATCTGCAGGACTGGAGGTAAAGAGAACTTTTTCCACTGTAACAAATGTGGATGTTGTTATTCATCATTGTTGAAGGATTCACACAACTGTATTGAAAAAGCAATGCATCACAATTGCCCGGTTTGTTTTGAGTTTCTTTTTGATACAACGGAAGACATTACTGTATTGCCATGTGGTCACACCATACACTTGGGATGtgtaaaagaaatgaaacagcATTTGCAGTATGCATGCCCAGTTTGCTCAAAGTCTTTTTACGATATGTCACGTGTGTGGGAGAAATTGGATGAGGAGGTTGCATCAACGCCAATGCCTGGAATCTATCAAAATAAGATGGTTTGGATTCTTTGCAACGACTGCGGGGAAAAATCTGAAGTAAGTTTTCATATTGTGGCACTCAAGTGCCCAAAATGCAAGTCCTATAACACCAGAAAGACGCAAGCTGCACCTGCTTCTTGGTCATCGAGGATTGAAGAGATGGCTAGATGA 969 0.4169 MACRRMIRVNMKTGIKNRDSFGMLVSKTSLTLMEPQLSSDGFSHQHPLVDGSPSEIGCGNYGCSHYKRRCKIIAPCCNEIFDCRHCHNESKNSIEVDPVNRHDVPRHDVKRVVCSLCSTEQNVQQMCIHCGACMGRYFCFKCKFFDDDVSKNQYHCDECGICRTGGKENFFHCNKCGCCYSSLLKDSHNCIEKAMHHNCPVCFEFLFDTTEDITVLPCGHTIHLGCVKEMKQHLQYACPVCSKSFYDMSRVWEKLDEEVASTPMPGIYQNKMVWILCNDCGEKSEVSFHIVALKCPKCKSYNTRKTQAAPASWSSRIEEMAR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0973 322 SUPERFAMILY CHY zinc finger-like 60 133 IPR037274 GO:0008270
Ssu4g0973 322 ProSiteProfiles Zinc finger RING-type profile. 199 242 IPR001841 -
Ssu4g0973 322 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 50 320 - -
Ssu4g0973 322 Pfam CHY zinc finger 63 144 IPR008913 GO:0008270
Ssu4g0973 322 ProSiteProfiles Zinc finger CHY-type profile. 56 132 IPR008913 GO:0008270
Ssu4g0973 322 Gene3D - 270 312 - -
Ssu4g0973 322 ProSiteProfiles Zinc finger CTCHY-type profile. 134 198 IPR017921 -
Ssu4g0973 322 SUPERFAMILY Zinc hairpin stack 135 192 IPR037275 -
Ssu4g0973 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 263 IPR013083 -
Ssu4g0973 322 Pfam zinc-RING finger domain 198 243 IPR001841 -
Ssu4g0973 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 50 320 - -
Ssu4g0973 322 Pfam Zinc-ribbon 247 304 IPR039512 -
Ssu4g0973 322 SMART ring_2 199 241 IPR001841 -
Ssu4g0973 322 SUPERFAMILY RING/U-box 198 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0973 Ssu-Chr4 15558136 15561183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0973 61 310 C2H2 Transcription Factor Family AT3G18290 40.310 2.75e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0973 K10144 - mnt:21405387 501.901