Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0970 ATGCAGGAGCAAGAGGAATTAAGGAACGAAACATGCAAGGATCACATGCAAATCATCAAGGGCAAGCGCAAAAGGCGTCAAAGGCTTCCATCCCCACTTAGGCTAACCATGTCAACATGTTCCAGCGCAGGAAGAAGCAGCACCGACAATTCCACAGGATTTGATCTCCCTACAACCTCAAACGAGTTAAGGAACGAAGAGGAGGACATGGCCAATTGTTTGATTCTCTTAGCTCGAGGCCATAACACCCCAAAACCCTCACACAAGTCACGACCTGATCACAACAAGGGAGGGCTACACCTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTCGGGGGCCACAGAGCCAGCCACAAGAAATCCAAGGCAAGtatggaagaaaagaaaggagttaCTACTTTTGTGAATGAAGTGGATAATAATCATGAGGATTGTGACCCCACAAGCACCACCCTCACCTTACAATTATCAACGGCTTTGTATAGTAGCAGCAATACTAGGACCATTAATGCTAAATCTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTCACATCTGGGCAAGCCTTGGGGGGACATATGAGGCGGCATAGAAATTTTCTGATTACGCCTACAACAATATCTACGAGTGGGGCAAATGGTGGTGATGGGAGTCCTGAAATTCCCCAGACCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCGCCTGAGGATGATCATAGAGAATCCAAATTGTTTCCTTTTCAGTCCAAAGAAAAAGTTATTGCCTTCTCCGCAACTTCTTTGGTGGATTGCCATTACTAA 837 0.4456 MQEQEELRNETCKDHMQIIKGKRKRRQRLPSPLRLTMSTCSSAGRSSTDNSTGFDLPTTSNELRNEEEDMANCLILLARGHNTPKPSHKSRPDHNKGGLHLYECKTCNRCFPSFQALGGHRASHKKSKASMEEKKGVTTFVNEVDNNHEDCDPTSTTLTLQLSTALYSSSNTRTINAKSKVHECSICGAEFTSGQALGGHMRRHRNFLITPTTISTSGANGGDGSPEIPQTKKHKDVLNLDLNLPAPEDDHRESKLFPFQSKEKVIAFSATSLVDCHY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0970 278 SMART c2h2final6 102 124 IPR013087 -
Ssu4g0970 278 SMART c2h2final6 182 204 IPR013087 -
Ssu4g0970 278 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Ssu4g0970 278 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Ssu4g0970 278 PANTHER ZINC FINGER PROTEIN ZAT5 6 277 - -
Ssu4g0970 278 MobiDBLite consensus disorder prediction 32 60 - -
Ssu4g0970 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 204 IPR013087 -
Ssu4g0970 278 SUPERFAMILY beta-beta-alpha zinc fingers 101 204 IPR036236 -
Ssu4g0970 278 MobiDBLite consensus disorder prediction 1 60 - -
Ssu4g0970 278 Pfam C2H2-type zinc finger 102 126 - -
Ssu4g0970 278 Pfam C2H2-type zinc finger 181 205 - -
Ssu4g0970 278 Gene3D Classic Zinc Finger 99 204 - -
Ssu4g0970 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Ssu4g0970 278 MobiDBLite consensus disorder prediction 212 231 - -
Ssu4g0970 278 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g0970 278 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 6 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0970 Ssu-Chr4 15478605 15479441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0970 8 278 C2H2 Transcription Factor Family AT2G28200 42.667 1.53e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0970 zf-C2H2_6 2.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0970 - - gsj:114399832 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0970 4 15478605 15479441 Ssu7g1230 7 27134585 27136153 ECH
Ssu4g0970 4 15478605 15479441 Ssu4g0970 4 15478605 15479441 ECH
Ssu4g0970 4 15478605 15479441 Ssu8g0622 8 10175428 10176321 ECH
Ssu4g0970 4 15478605 15479441 Ssu7g2473 7 48222384 48223232 PCT