Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0966 ATGGCGTTCCCTTTGGGAGCCCTCGTGACAACATCATTGCTCTTTCTTGTTGCATTTCCACTTCCTAATGTCCATGCGAAGGTTAGCTCCTCGTGGAGTCATGCAGCTCATAACATGGCTGGAAGACGCAACAAGATAGTAGACCTCGAGCATCATCACCCCGTTTTTGGGCCTGGCCCATGGAAGCAAGCTCATGCTACCTTCTATGAGGGAGGCTCTGGAACATTTGGAGGAGCTTGTGGGTATGAGGATGTGGTTAAAGATGGTTATGGCCTTGACACGGCAGCATTGAGCTCAGTTTTGTTCAACCATGGTCAGACATGTGGAGCATGTTACGAGATCAAATGTGTAAACTCTCCTCAGTGGTGTAAGGCAGGACAACCCTCTATTTTTGTCACGGCAACCAACCTTTGCCCCCCCAATTATGCTCAGCCAGGTGACAATGGAGGATGGTGCAACCCTCCACGCCAGCACTTTGATTTAGCCAAACCTGCGTATCTCAAAATTGCAGCGTACAAGGCTGGGATCGTGCCAGTCCAATATCGCAGGGTAGCGTGCAAGAAGCAAGGAGGTATTCGGTTCACGATCACTGGGAATCCTTACTTCAATCTAGTAAAAGTGTGGAATGTTGGAGGAGCTGGGGACATCACAGGAGTGCAGGTGAAGGGTAACAAGAAGCAGATCAATTGGACAAATTTGAAGCGAAATTGGGGTCAGAAATGGGAGACTAATGCCATGTTAGTGGGGAGACATTGA 756 0.4894 MAFPLGALVTTSLLFLVAFPLPNVHAKVSSSWSHAAHNMAGRRNKIVDLEHHHPVFGPGPWKQAHATFYEGGSGTFGGACGYEDVVKDGYGLDTAALSSVLFNHGQTCGACYEIKCVNSPQWCKAGQPSIFVTATNLCPPNYAQPGDNGGWCNPPRQHFDLAKPAYLKIAAYKAGIVPVQYRRVACKKQGGIRFTITGNPYFNLVKVWNVGGAGDITGVQVKGNKKQINWTNLKRNWGQKWETNAMLVGRH 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0966 251 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 89 103 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 239 251 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Ssu4g0966 251 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Ssu4g0966 251 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576
Ssu4g0966 251 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Ssu4g0966 251 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Ssu4g0966 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 251 IPR007117 -
Ssu4g0966 251 SUPERFAMILY Barwin-like endoglucanases 60 209 IPR036908 -
Ssu4g0966 251 Gene3D - 189 250 IPR036749 -
Ssu4g0966 251 PANTHER EXPANSIN-A15 37 250 IPR002963 GO:0009664
Ssu4g0966 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Ssu4g0966 251 PANTHER EXPANSIN-A32 37 250 - -
Ssu4g0966 251 Gene3D - 45 187 IPR036908 -
Ssu4g0966 251 Pfam Expansin C-terminal domain 192 246 IPR007117 -
Ssu4g0966 251 Pfam Lytic transglycolase 94 181 IPR009009 -
Ssu4g0966 251 SMART dpbb_1 94 181 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0966 Ssu-Chr4 15384489 15386930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0966 55 250 Expansin Gene Family AT3G55500 66.667 1.77e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0966 - - gmx:100800424 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0966 4 15384489 15386930 Ssu4g0966 4 15384489 15386930 ECH