Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0945 ATGCAATACACCAGTCCAAGAAGGGCGGTTGCAACGGATTCAATTCGAAATGGGATTCAACAGAACCATCTTTGGCTTTCTGGCTttgtcatttttctcttttcgaTCATATTTGTTCTTTATACCACGCCACCTTCCCCCACCGCTAGCACGGCCATTAGTCCTCAAGATAGTTTCAGTTTCCAGCTTGGAATATTTAGTAAGATTATAAAGCTTAGTGGCGCTCAAGACTTTGTGTCTCTGCTAACAAGGATAGCTAGGAGAAGACATCATCACCGGAGGAGACATAAGGAAAAATGTGACGGAAACAAATGGGATTCCGGGCTTATTCAAGACTATAATGTGAGTCTCGTTCTCACGGTTGGCTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAGAAAGCCGTTGATGCTGTTCCTGAatcttgctctgataccacccTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGTGGTGCAGGCcaacaaaacaaatttgatACTTCAAGGTCAAGGGTATCTCAATACAATCATAGAATGGAATGACACCGCGAATTCCACCGGCGGGACTTCCTACAGCTACTCGTTTGCCATCCTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGACTGGTTGGGGCACAAGCAGTGGCACTTAGGGTTACCGGTGATCAAGCCGCTTTCTATGGGTGTGGGTTTTATGGTGCGCAGGACACGCTCAATGATGACAGTGGGAGgcattattttaaagaatgttTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTtatgagGATTGTACCATAAACTGTGTAGCAAAAGAAGAGGGGGTTGGGGTTAGCGGCTCCATCACAGCTCAGGGCCGACAATCGATTAATGAGGAAACTGGGTTTTCTTTTGTGAATTGTAGCGTTGTTGGGAGTGGGAGAGTGTGGCTTGGAAGAGCATGGGGAGCCTTTGCCACTGTGGTCTTCTCAAGAACATTCATGTCTGAAGTCGTAGCTCCTGATGGATGGAACGACTGGAGAGATCCATCTAGAGACCAGAGCGTCTTCTTTGGGGAGTACCGTTGTCTTGGACCTGGAGCAAATTATACATCCAGAGTCTCTTATGCGAAGCAACTCAGGGATTACGAAGCAAACTCCTACATGACTATTTCGTACATTGATGGAAATGATTggcttcttaattattttcacaactATGTTAACCCTTCATATATCTAA 1281 0.4223 MQYTSPRRAVATDSIRNGIQQNHLWLSGFVIFLFSIIFVLYTTPPSPTASTAISPQDSFSFQLGIFSKIIKLSGAQDFVSLLTRIARRRHHHRRRHKEKCDGNKWDSGLIQDYNVSLVLTVGLKGCANFSSVQKAVDAVPESCSDTTLIIIDSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTANSTGGTSYSYSFAILASKFTAYNISFKNTAPPPSPGLVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDSGRHYFKECFIQGSIDFIFGNARSLYEDCTINCVAKEEGVGVSGSITAQGRQSINEETGFSFVNCSVVGSGRVWLGRAWGAFATVVFSRTFMSEVVAPDGWNDWRDPSRDQSVFFGEYRCLGPGANYTSRVSYAKQLRDYEANSYMTISYIDGNDWLLNYFHNYVNPSYI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0945 426 PANTHER PECTINESTERASE 14-RELATED 27 418 - -
Ssu4g0945 426 Pfam Pectinesterase 120 410 IPR000070 GO:0030599|GO:0042545
Ssu4g0945 426 ProSitePatterns Pectinesterase signature 2. 267 276 IPR033131 -
Ssu4g0945 426 SUPERFAMILY Pectin lyase-like 116 415 IPR011050 -
Ssu4g0945 426 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 27 418 - -
Ssu4g0945 426 Gene3D - 113 421 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0945 Ssu-Chr4 15064497 15070681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0945 112 413 Carbohydrate Esterase AT1G05310 53.443 1.50e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0945 - - gmx:100802034 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0945 4 15064497 15070681 Ssu7g1918 7 38407303 38412192 PCT