Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0944 ATGGACGCCGCCGTGAAGCCAGAATCGGAATCCGCGGCCGTTGTGACGGATCAGCCTCGGAAAGTTTCGGTCGTGAATGGTTACATTGTTTACACTCGAGCCAAGAGGTCTCTCGATTCGTGTAACGGTTTTTCTGGACACGTGGAATTGAAGGCGAAGGCGAGTGCGGAGCTTGCAGTTAAAACAGAGAACGAAGAGTGTGAGGAGCTGAAGAATGAGTCCTCGGAGGTGGCGGTGAGGACGCGCAAGCGGTACCGGCGGTCGGCGTCGGAAGCGAAGGTCGAGTGTTGTGATCAGACGTTGGTGACTGAGTTGGAACAAGTTGCGAATGGCGGAAGTGGAATCAACGGTGCATTGGCAGCTCCGAGGAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAGAGCTCTTCGATACGGGTTTCCTTGATGGGGTCTCGGTGGTTTACATGGGCGGCATTAAGAAGgctTCGGGATTACGAGGTGTGATTAAAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCAGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCTTGCTTGATCTGTTGAGAGCAAGCAGGGGAGTTCCCCTGCATAATTTGGAGGCGAcagttcaaaattttgtttgttcTCCACCTGAAGAAAGATATTTTACTTGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCATTTGTGGAAAGTGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAATCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGTTGCTCTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAATTAAGAGACACTGGAAGGAAAGAACAAAGTCATCAAAGAGGATTAGCAGTTCAAATTCTTCCAAGAATGCTTCTGTGGCTGTTCTACCCCGGAAGAAAAATTTGTCGaagatgaaaaagaaGTCACTGTCAGTAAAGTTGAAGTCCCGGGAAAAAACTTCAAATTCAAAGTGTTTATCTAATAAAAGTCAATGGAGGATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTTCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTAGCAATATCTCTCTCGAAAGATCGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAACCTGTTGCTTTGCGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAAAGAGAAAAGTTTGTGGCACACAATGCCAATGCTGTAGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTACCAGTAGATGCATTCGCATAGTCAAAGACATTGAAGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGCTTTGGCCCACGCACAATAATACTCTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGAGATCACAAGATGGCATTTTTAAAGGAATTGCCGGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAACCTTTTAGTTAGGGGGTTTGAGAGACTCCCTGAATCTCTTTTGGGTGTCATAAAGAAAAAGCAACTGGAAAAAGGATTAGAACCCATCAATGATATTGATGTAAGATGGAGACTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGTCATGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGGATTTTTGGCACAGATATTGCTGAACTCCCTTTAGTTGCAACGAGTAACAGGAGCCACGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGTTGGCTTTCTTGAATGTGAAGAACCTTGTGCTGCCCGCTGCAGAAGAAGCAGAATCCATTTGGACGGATAAATTTGGGTTTAGCAAGATGAAACCAGATCAGCTTACCAACTATAGAAAGAAGTGCAATCAGATGGTCACTTTCAAAGGGACAAATATGTTGCATAAAATGGTACCTCCGTGTCGGGTCATCAATAATCAATCgtga 2550 0.4396 MDAAVKPESESAAVVTDQPRKVSVVNGYIVYTRAKRSLDSCNGFSGHVELKAKASAELAVKTENEECEELKNESSEVAVRTRKRYRRSASEAKVECCDQTLVTELEQVANGGSGINGALAAPRNKLELKMSKKIVVNRKPMTVKELFDTGFLDGVSVVYMGGIKKASGLRGVIKDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRASRGVPLHNLEATVQNFVCSPPEERYFTCKRCKGCFPSSFVESVGPICRSCVESRKSEESSNNVVGKRVRSPRPVLLSNPSSTSELSVSSQIKRHWKERTKSSKRISSSNSSKNASVAVLPRKKNLSKMKKKSLSVKLKSREKTSNSKCLSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQITSRCIRIVKDIEAELSGCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAFLKELPEGNWLCCNDCTRIHSTLENLLVRGFERLPESLLGVIKKKQLEKGLEPINDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGHDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNRSHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMKPDQLTNYRKKCNQMVTFKGTNMLHKMVPPCRVINNQS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0944 849 ProSitePatterns Zinc finger PHD-type signature. 484 523 IPR019786 -
Ssu4g0944 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 557 IPR013083 -
Ssu4g0944 849 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 57 845 - -
Ssu4g0944 849 SMART PHD_3 483 524 IPR001965 -
Ssu4g0944 849 SMART PHD_3 571 628 IPR001965 -
Ssu4g0944 849 MobiDBLite consensus disorder prediction 299 314 - -
Ssu4g0944 849 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 722 812 IPR016181 -
Ssu4g0944 849 SUPERFAMILY FYVE/PHD zinc finger 563 625 IPR011011 -
Ssu4g0944 849 PANTHER AUTOIMMUNE REGULATOR 57 845 - -
Ssu4g0944 849 MobiDBLite consensus disorder prediction 286 362 - -
Ssu4g0944 849 SUPERFAMILY FYVE/PHD zinc finger 470 528 IPR011011 -
Ssu4g0944 849 ProSiteProfiles Zinc finger PHD-type profile. 481 526 IPR019787 -
Ssu4g0944 849 Coils Coil 53 80 - -
Ssu4g0944 849 Pfam PHD-finger 484 525 IPR019787 -
Ssu4g0944 849 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 630 IPR013083 -
Ssu4g0944 849 Pfam Tify domain binding domain 421 467 IPR032308 -
Ssu4g0944 849 Pfam Tify domain binding domain 171 224 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0944 Ssu-Chr4 15053837 15061425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0944 132 846 PHD Transcription Factor Family AT2G36720 54.918 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu4g0944 TDBD 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0944 - - gmx:100802562 1527.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0944 4 15053837 15061425 Ssu7g2492 7 48830538 48846314 PCT
Ssu7g1859 7 37382698 37386185 Ssu4g0944 4 15053837 15061425 PCT