Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0942 ATGTCCATTTTTCCAACAATGGGATTTAAGCAGGACACAGTGCTGTGTGTGTCGATTCACGCGGACGCCGCTAGGAGCGAGTGTAACATGTATTGCCTAGACTGTAATGGCGATGCCTTTTGCTTTTATTGCCGTTCTTCCAGACACAAAGATCATCAGGTCATTCAGATAAGACGATCCTCGTATCATGATGTAGTGAGGGTCGCAGAAATTCAGAAGGTGTTGGACATAAGTGGGGTGCAGACATATGTGATCAACAGTGCCCGAGTTTTGTTCTTGAATGTGAGGCCTCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCATTTCGGTTCTGTTCTTTGGGATGTAAGCTTGaaggaataaagaaaaatggGGATGCATGCTTTGCTTTGGATAGTAGGAATGAAGAATTGACAATGGATACTGCAAAGGAGGCTATGTCAAGGAGATCAGTCTCGTCAAGACAGCAAGAAGAAGGATTGCGTGAAGGCTCAACACAAGACATGTATCCGGCCACGCCTTCTCCACCTGCTTCAAATGCAAGGAGAAGAAAAGGCATTCCACATAGGGCGCCTTTTGGCTCCTAA 621 0.4509 MSIFPTMGFKQDTVLCVSIHADAARSECNMYCLDCNGDAFCFYCRSSRHKDHQVIQIRRSSYHDVVRVAEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDACFALDSRNEELTMDTAKEAMSRRSVSSRQQEEGLREGSTQDMYPATPSPPASNARRRKGIPHRAPFGS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0942 206 MobiDBLite consensus disorder prediction 154 206 - -
Ssu4g0942 206 Gene3D Classic Zinc Finger 21 60 - -
Ssu4g0942 206 Pfam PLATZ transcription factor 58 129 IPR006734 -
Ssu4g0942 206 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Ssu4g0942 206 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0942 Ssu-Chr4 14984944 14986270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu4g0942 PLATZ 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0942 - - gmx:100803083 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0942 4 14984944 14986270 Ssu7g2499 7 48979300 48980660 PCT