Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0935 ATGGCGGTTCCTCCGACCGTCGCCGCCGCTCCGGCGTCTCTCTACGTCGGCGACCTCCATCCCGACGTCACCGACGGCCATCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCCGTTCGCGTCTGCAAAGACTCTTCCACCGGCAAATCCCTCTGCTATGGCTACGTCAACTTCGTTTCTCCTCAAGACGCAATTCGTGCGATTGAGTTGAAGAACCATTCCACGCTGAATGGAAAAGTGATAAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAGCACTATAGGGAACTTGTTTGTTAAGAACTTACCCGAATCGATAGATAATGCTGGACTGCAAGCTATGTTCAAAAAATATGGGCATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCGGAAGAATATTCAAATGTTGCTATCGAGAAACTGAATGGCTCTACTGTTGGCGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAGAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACCAATTTGTATATGAAGAATTTGGATCTGGATATTGCAGAAGCAACTCTGCAGGAAAAGTTTTCCACCTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAATGGGATGTCAAAGGGTTTTGGCTTTGTGAATTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGCGAGCAGATCTTGCACCATCAATTTGAGGAGAAACGGAAGgaacaaatattgaaatacaagGGATCAAACATTTATGTGAAGAACATTGATGACAATGTAAATGATGAAGAACTGAGGGATCATTTTAGTGCTTGTGGCACTATAACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAGCAAATAGCAGGACTAGCTGGACCTTCAACTGCCATTATCCCTGGTGGATATCCTCCATACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGGCCGGGATGGGGGACTAATGGCTTTGCTCCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCCGCATAGGCAAAACAGGGGCAGGTTGAATGGGCATTCAGTATCACAGGGAAATACTCACTCCGGTACTTATTTACAACAAGCCCAGCTAATTTCTCAGTCAGTGATCTCTTCAAGAGAGTCAAGTGCTCAGCAGAGAACCGGGCAGGCTAAGTACATCCCTAGTGGACGCCAGCGTGACATGGAAAAAGGATCCGGATCCACATCTGGTGGTTCAAACTCTGGCGGAGGGTCCCAGGGGTCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATACTCGGGGAGCATCTTTACATGCTTGTTCAGAAACTAAAGCCTAGCCTAGCGGCAAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAGTTACCTTTCAGCTGAGGTTGCAGTGAACTGA 1908 0.4575 MAVPPTVAAAPASLYVGDLHPDVTDGHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNHSTLNGKVIRVMWSRRDPDARKSTIGNLFVKNLPESIDNAGLQAMFKKYGHILSSKVVMSEDGKSKGYGFVQFESEEYSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDIAEATLQEKFSTFGKIVSLAIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDNVNDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQIAGLAGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLALRPGWGTNGFAPPARSFQQSPVPAVSNNTRPHRQNRGRLNGHSVSQGNTHSGTYLQQAQLISQSVISSRESSAQQRTGQAKYIPSGRQRDMEKGSGSTSGGSNSGGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVQKLKPSLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSSYLSAEVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0935 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Ssu4g0935 635 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Ssu4g0935 635 MobiDBLite consensus disorder prediction 494 510 - -
Ssu4g0935 635 MobiDBLite consensus disorder prediction 494 540 - -
Ssu4g0935 635 Coils Coil 263 283 - -
Ssu4g0935 635 CDD RRM2_I_PABPs 99 174 IPR045305 -
Ssu4g0935 635 SUPERFAMILY PABC (PABP) domain 512 622 IPR036053 GO:0003723
Ssu4g0935 635 CDD RRM4_I_PABPs 293 371 - -
Ssu4g0935 635 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Ssu4g0935 635 PANTHER RNA BINDING PROTEIN 5 532 - -
Ssu4g0935 635 PANTHER RNA BINDING PROTEIN 539 620 - -
Ssu4g0935 635 MobiDBLite consensus disorder prediction 519 539 - -
Ssu4g0935 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Ssu4g0935 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Ssu4g0935 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Ssu4g0935 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Ssu4g0935 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Ssu4g0935 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Ssu4g0935 635 MobiDBLite consensus disorder prediction 440 478 - -
Ssu4g0935 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Ssu4g0935 635 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Ssu4g0935 635 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Ssu4g0935 635 Gene3D - 101 180 IPR012677 -
Ssu4g0935 635 Gene3D - 5 100 IPR012677 -
Ssu4g0935 635 PANTHER POLYADENYLATE-BINDING PROTEIN 5 532 - -
Ssu4g0935 635 PANTHER POLYADENYLATE-BINDING PROTEIN 539 620 - -
Ssu4g0935 635 Gene3D - 536 616 - -
Ssu4g0935 635 SUPERFAMILY RNA-binding domain, RBD 8 94 IPR035979 GO:0003676
Ssu4g0935 635 MobiDBLite consensus disorder prediction 438 478 - -
Ssu4g0935 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Ssu4g0935 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Ssu4g0935 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Ssu4g0935 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Ssu4g0935 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Ssu4g0935 635 CDD RRM1_I_PABPs 13 92 - -
Ssu4g0935 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Ssu4g0935 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Ssu4g0935 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Ssu4g0935 635 Gene3D - 181 276 IPR012677 -
Ssu4g0935 635 Gene3D - 277 382 IPR012677 -
Ssu4g0935 635 SMART poly_2 550 613 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0935 Ssu-Chr4 14899108 14903389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0935 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 53.748 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0935 K13126 - gmx:100779547 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0935 4 14899108 14903389 Ssu4g0935 4 14899108 14903389 ECH