Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0933 ATGATTGCTGAATCAAACATGAGACCCAGCTTCCATTTTTGCTAtgcctttcttcttttccttgtCCTTGGCCATCACACTTCTTCACAGAAGACTTGTCCAAACTGTGGATCTATGCAAGTTCCATATCCTTTGAGCACAGATCCAAGTTGCGGTGATCCACACTATAAACTTGGTTGTGATCCCCACTCTGAAAGGCTTTACTTTGACGCACTCAATGGAAGTTCCTATCTCGTTCTCAGAATCATGTCTTCAATCCAGCGCATGGTGGTACAGCCATCACCTTGGTTACCAGGTTCATGTGTCACACAAGACATGCCAAGAAGCAATGGTATATGGTTAAACCAGTCACTCCCTTTCAACATCACTTCATCTAACACATTGTTCCTCTTTAATTGTTCCCCTCGCCTCTTGGTTTCTCCGCTTAACTGCACTTCTTCTAGCATTTGCCATCGTTACTTGGAGAGTTCAGGTCATGTTGACACAAAACGAGCACAAGAGTGTGCAAGTGGTCTTCACCCTTGTTGCACTTTTGTAGCTGGTGGAATACCTTCGGCTTACAGGATCAGGCTTCATGAGTCTGGTTGCAAAGCATTCAGAAGCATTCTTCATTTGGACCAAGACAAGCCTCCAAATCAGTGGGAGGAAGGCCTTGAAATTCAATGGGCACCTCCACCTGAACCAGTGTGCAAGACACAAAGGGATTGCTCTCGAGACTCTACGTGTTCCCCTTCTGGTAGAAATGGCCTATTTCGCTGTCTTTGTAATGGGGGACACAGTTGGAACCCTTTTGTAGCAACCTGTGTGAGGTATGAGAGAAAATCCAAATGGAAAACCGGCTTGTTGGCCTCAATAGGGGTTGTTgttacttttttctctcttgctgTGGTTCTGGCCATAATCACAAAGTCCTGTAGACTCTCTACCTTTAGAGAGAAACAGGCCAAGGAAAGAGAAGATGGGCTGAAATCAAGAGCTGGGGAGAAGCCTTGTAGGATGTTTCCACTGAAAGAGGTGAAGAAAGCAACAGATGGTTTTTCCCAAGCGAGGATCTTAGGGAGTGGTGGCTTTGGCGAAGTTTTCAAAGGTGAGTTACAAGATGGAACATTAGTGGCTGTGAAGAAGGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTGAATCACAAGAACCTAGTCAGGCTCTTGGGGTGCTGTGTGGAATCTGAGCTGCCTCTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGACTGGAAAACAAGGCTGAAAGTTGCTTTTCAAACTGCAGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCCATCTACCATAGAGATGTTAAGTCAACAAACATACTATTGGATGATGAATTCAATGCCAAGGTCTCAGATTTTGGACTTTCCAGATTGGCTAACCCGGGACTTAGTCATGTCTCAACATGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGATTTTGACTTCCCAGAAAGCGATAGACTTCAACCGTGATCAAGATGGTGTCAATCTAGCAATTCATGTGAATCAACATGCCAGCAATGGTACAATCATGGAAGTGGTGGATCAAAGGCTTCTTTCCGTGGAGCCCTTGGGGGATAAAATGTTCACAAGCATAAAACTCTTCTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCCTACTATGCATAGTTAGGATTGTAGAACAAGAGTGA 1896 0.4341 MIAESNMRPSFHFCYAFLLFLVLGHHTSSQKTCPNCGSMQVPYPLSTDPSCGDPHYKLGCDPHSERLYFDALNGSSYLVLRIMSSIQRMVVQPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTLFLFNCSPRLLVSPLNCTSSSICHRYLESSGHVDTKRAQECASGLHPCCTFVAGGIPSAYRIRLHESGCKAFRSILHLDQDKPPNQWEEGLEIQWAPPPEPVCKTQRDCSRDSTCSPSGRNGLFRCLCNGGHSWNPFVATCVRYERKSKWKTGLLASIGVVVTFFSLAVVLAIITKSCRLSTFREKQAKEREDGLKSRAGEKPCRMFPLKEVKKATDGFSQARILGSGGFGEVFKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLEILTSQKAIDFNRDQDGVNLAIHVNQHASNGTIMEVVDQRLLSVEPLGDKMFTSIKLFLELALECLREKKGERPNMRDIVQRLLCIVRIVEQE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0933 631 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Ssu4g0933 631 Gene3D Transferase(Phosphotransferase) domain 1 422 630 - -
Ssu4g0933 631 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 631 - -
Ssu4g0933 631 SUPERFAMILY Protein kinase-like (PK-like) 327 621 IPR011009 -
Ssu4g0933 631 CDD STKc_IRAK 352 621 - -
Ssu4g0933 631 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 631 IPR045274 GO:0007166
Ssu4g0933 631 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Ssu4g0933 631 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0933 631 Pfam Protein tyrosine and serine/threonine kinase 349 621 IPR001245 GO:0004672|GO:0006468
Ssu4g0933 631 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0933 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Ssu4g0933 631 Pfam Wall-associated receptor kinase galacturonan-binding 33 91 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0933 Ssu-Chr4 14871050 14872945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0933 33 631 Receptor kinase-like Gene Family AT5G02070 47.200 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Ssu4g0933 PK_Tyr_Ser-Thr 5.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0933 - - gmx:100804678 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0933 4 14871050 14872945 Ssu4g0933 4 14871050 14872945 ECH