Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0926 ATGGTTCTCAAAACTGAACTGTGCCGATTCAGTGGTGCCAAGATCTATCCAGGAAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGGTCTTCCTGTTTGCTAATTCAAAATGTAAAAGGTATTTCCACAACCGCTTGAAGCCATCAAAACTCACCTGGACTGCAATGTACCGGAAGCAACACAAGAAGGACATTGCTCAAGAAGCCGTGAAAAAAAGGCGTCGTGCTGCCAAGAAGCCTTACTCTCGGTCCATTGTTGGTGCCACTTTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCgTGAAATTAAGGAGAGGATCAAGAAAACCAAGGATGAGAAAAAAGCTAAGAAAGCAGAAGTTGCAGCTAAGACGCAAAAATCACAAGGGAAAAGCAATGTTTCAAAGAGTGCTATGCCAAAAGGTCCCAAACTCGGTGGTGGAGGCGGAAAACGCTGA 495 0.4485 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAAKTQKSQGKSNVSKSAMPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0926 164 Gene3D - 69 139 - -
Ssu4g0926 164 MobiDBLite consensus disorder prediction 117 136 - -
Ssu4g0926 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Ssu4g0926 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Ssu4g0926 164 SMART 4TRASH 8 46 IPR011017 -
Ssu4g0926 164 PANTHER 60S RIBOSOMAL PROTEIN L24 3 164 - -
Ssu4g0926 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Ssu4g0926 164 Coils Coil 112 139 - -
Ssu4g0926 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Ssu4g0926 164 PANTHER 60S RIBOSOMAL PROTEIN L24 3 164 IPR000988 -
Ssu4g0926 164 MobiDBLite consensus disorder prediction 117 164 - -
Ssu4g0926 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0926 Ssu-Chr4 14738453 14740469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0926 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 85.987 8.15e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0926 K02896 - gmx:100499720 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0926 4 14738453 14740469 Ssu4g0926 4 14738453 14740469 ECH
Ssu4g0926 4 14738453 14740469 Ssu7g2515 7 49260575 49262862 PCT