Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0925 ATGGAATTGAAAGGAAGAGATCTAAACAGGAAAGTGGAAGCAGACATGGATTGGAATCAGAGCACAAAACCCTTTGTTCCTCGGCCAGAGTCCTCCTTAAGCTTCTTCTACAACTATAACAACAACCCATATCCAGCAGTGGAAGTGAAACAAGCGGCGACATTGACGGAGACAGGACAAAGGTTGGTTCCGGCAATGGACAACGGAAACAGAGAGAAGAAGAAGCGATTAACAAGTGACCAGATAGAATTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGAAAGATGAAGCTTTCTCGTGAGCTAGGCCTCCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGACGCGCTTAAACACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGATGAGGTTATGAGGTTGAAGGCAATGCTAAGTAGAGAGCAAGGTTTTGGGACGCAAACATTTGGAGGTTACACAGAAATATCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAAGGGGTTCCAACAAGCCACGGGGAAAGAATAACATTGAGCAGGTTGCAGATCAGGGCTATTGTTCTTTCACTGTGGAGGATTATAACACAGTTTCACTGCCTCACTGCCACTGGCCTGTTATGCCTTATTAG 708 0.4562 MELKGRDLNRKVEADMDWNQSTKPFVPRPESSLSFFYNYNNNPYPAVEVKQAATLTETGQRLVPAMDNGNREKKKRLTSDQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDALKHQYDVISNEKQKLQDEVMRLKAMLSREQGFGTQTFGGYTEISGEETVESTSEGLRGSNKPRGKNNIEQVADQGYCSFTVEDYNTVSLPHCHWPVMPY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0925 235 CDD homeodomain 71 129 IPR001356 GO:0003677
Ssu4g0925 235 SMART HOX_1 70 132 IPR001356 GO:0003677
Ssu4g0925 235 Gene3D - 65 135 - -
Ssu4g0925 235 Pfam Homeobox associated leucine zipper 128 162 IPR003106 GO:0006355|GO:0043565
Ssu4g0925 235 MobiDBLite consensus disorder prediction 181 203 - -
Ssu4g0925 235 SUPERFAMILY Homeodomain-like 62 130 IPR009057 -
Ssu4g0925 235 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 232 - -
Ssu4g0925 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 232 IPR045224 GO:0003700
Ssu4g0925 235 Coils Coil 127 161 - -
Ssu4g0925 235 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Ssu4g0925 235 Pfam Homeodomain 71 126 IPR001356 GO:0003677
Ssu4g0925 235 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Ssu4g0925 235 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Ssu4g0925 235 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0925 Ssu-Chr4 14727616 14729633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0925 16 158 Homeobox Transcription Factor Family AT5G03790 49.102 2.37e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu4g0925 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0925 - - vra:106757543 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0925 4 14727616 14729633 Ssu4g0925 4 14727616 14729633 ECH
Ssu4g0925 4 14727616 14729633 Ssu7g2516 7 49267103 49268716 PCT