Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0922 ATGGAACCGAATGCACTAGGGGGTGGAATATTTCCTAACATAAGCAGTGGTTTGCTAGGAGTAGAAAACCCtttacagcaacaacaacaaccaagccTTCAAAACCAGCAAAACCCCCACCCTTTGCACCATCCCCAAATGGTTTCCTATGCCACCCACCATGACACTGACACACATCAACAACAACCACCTCAGCAAGCAATCAAACATGGCTATAACTATTCAGCCACCAAGTCCAACAAGCCACAAAGCACACTGAGTGATGAAGATGAACCCGGGTTCACAGCTGATGACAGCAACTCTGGGGACCCCAAGAGGAAGGTGTCACCATGGCATAGAATGAAGTGGACTGATACCATGGTAAGGCTCTTAATTATGGCGGTTTATTACATTGGAGATGAGGCTGGTTCAGAAGGCACTGATCCCTCAGGGAAGAAGAAAGCCGCGGGGGTGCTTCAAAAGAAAGGGAAATGGAAATCGGTGTCAAGGGGCATGATGGAAAAGGGGTTCTACGTGTCTCCTCAGCAATGTGAAGACAAGTTTAACGATTTGAACAAGAGGTACAAGAGGGTCAACGACATTCTAGGCAAGGGCACAGCATGTCGGGTTGTGGAGAACCAAAGCTTGTTGGATACTATGGATCTGTCACCAAAGATGAAGGAAGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTGCTTACCATAACAGTTGTGGCCATGGaagcaacagcaacaacaactgTGGCAGTGGCAGTGGCACTTCCTATGTGCAACAATCAGCAGAGGCTGGAGCTGAGGCTCAGCCACAACATCAGCAGAGATGTTTGCATTCATCAGAGAACGGGGTGGGGAGTTTGGGAATGTTGAAAGAGGACGAGGATGAGGACGAGGACGAGGATTCTGAGGAGTTTTCTGATGAGGAGGAAGAGGAATCAGGAGAAGGGGGGTCAAGGGGTATGGAGGAGGATGAGAATGATGTTATGAGGAAGAGAGCAAGGAAGGGAGGGTTTGGTGTGTCATCATCACAGGTGATGCAGCAGTTGAATGGTGAAGTGAGTAGTGTGTTGCAAGATGGCGGGAAGAGTGCTTGGGAGAAAAAGCAGTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAGCGCAGGCGTTTGAGCTGGAAAAGCAGCGTTTGAAGTGGACGAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGGGATAAGCTTCAAAATGAACGGAGGAGGCTGGAAATAGGGAGAATGGTCTTGCTACTTCGCCAGAAGGAGCTTGAAGTGATGAATATTCAGCATCAGCAGCATCAACAGCAACATTCTTCTACATAG 1377 0.4691 MEPNALGGGIFPNISSGLLGVENPLQQQQQPSLQNQQNPHPLHHPQMVSYATHHDTDTHQQQPPQQAIKHGYNYSATKSNKPQSTLSDEDEPGFTADDSNSGDPKRKVSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPSGKKKAAGVLQKKGKWKSVSRGMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHGSNSNNNCGSGSGTSYVQQSAEAGAEAQPQHQQRCLHSSENGVGSLGMLKEDEDEDEDEDSEEFSDEEEEESGEGGSRGMEEDENDVMRKRARKGGFGVSSSQVMQQLNGEVSSVLQDGGKSAWEKKQWMKKRVVQLEEQQVSYQAQAFELEKQRLKWTRFSSKKEREMERDKLQNERRRLEIGRMVLLLRQKELEVMNIQHQQHQQQHSST 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0922 458 MobiDBLite consensus disorder prediction 256 286 - -
Ssu4g0922 458 Gene3D - 116 190 - -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 296 323 - -
Ssu4g0922 458 Coils Coil 410 430 - -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 256 332 - -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 24 43 - -
Ssu4g0922 458 Pfam Myb/SANT-like DNA-binding domain 113 239 IPR044822 -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 75 109 - -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 24 46 - -
Ssu4g0922 458 PANTHER F16F4.11 PROTEIN-RELATED 1 458 - -
Ssu4g0922 458 Coils Coil 380 400 - -
Ssu4g0922 458 MobiDBLite consensus disorder prediction 75 90 - -
Ssu4g0922 458 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0922 Ssu-Chr4 14680348 14681724 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu4g0922 Myb_DNA-bind_4 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0922 - - aprc:113863792 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0922 4 14680348 14681724 Ssu4g0922 4 14680348 14681724 ECH
Ssu4g0922 4 14680348 14681724 Ssu7g2519 7 49360865 49362274 PCT