Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0920 ATGAAAAAGGGTTGTCCCATAAACCTGGCACTGGCCTTGGCCGCGGCCTTGTGCATCCTCCGTGTAGCAGAGAGCGCAGGCCAGAATGATACGCACGCCCTCACCGAATTCCGCCTCCAAACCGACACCCACGGCGGCCTCCTCACCAACTGGACCGGCGGCGACGCCTGCGCCGCCGCATGGCGCGGCGTCGAGTGCTCCCCAAACGGAAGAGTGGTGGGCCTCATCCTCCCCTTCCTCAACCTCCGCGGCCCAATTGATTCTCTCTCCCCACTCACCTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTGAACGGCACCGTTTCTCCTCTCCTAAACTGCACCAGCCTGGAACTCCTCTACCTCTCCCGCAACGACTTCTCCGGCGAGATTCCGCCGGAGATAGCGTCCCTCCGACTCCTCCTCCGCCTCGACATCTCCGACAACAACATTCGAGGCCCAATCCCCGACCAACTCGCAAAACTAACCCACCTCCTAACCCTTCGGCTGCAAAACAACGCCCTCTCCGGCCACGTCCCCGACCTCTCCTCTTCCCTCCTCAACCTCACCGAACTCAACGTGACCAACAACGAACTCCGCGGCCACGTGCCCGATCCCATGCTCAGCAAATTCGGCAACGCAAGCTTCTCCGGCAACCACGCCCTCTGTGGGTCCCCCACGTTGCCGAAATGTCCCACGACCGAGACAGAGCCAGAGACGGTTACTCCTCCTTCCGTAACCGTTCCTTCAAAGCCGAGCTCGTTGCCGCAAACGAGTGGCGTTGCCGTTACCGATAACACTCCTAGAAAGAGAGGGTTGAGCGCGGGCATCATTGTGGCGATTGTGGTGGCGGCTTGCGTGGCGGTGCTGGTGGCGATGTCTTTCGTCGTGGCGCACTGCTGCGCCGGGGGAGGAGGCTCCGGCTCGGTGGTGGGGAGCGAGAGTGGGAAGAGGAAGAGTGGGAGCAGCAGTGGGAGCGAGAAGAAGGTGTGTGGGAATAGTAACAGCGTGGATCGAGATAGCGACGGGACAAACACTGAAACAGAACGAAGCAAACTCGTGTTCTTCGACAGAAGGAACCAGTTCGAGTTGGAGGATCTTCTTCGAGCTTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGAACGGTTTACAGAGCGGTTCTCGACGATGGCTGCACCGTCGCTGTAAAGAGACTCAAAGACGCTAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGATGTTGTAGGGAAGCTCAGGCACCCTAACATTGTGAGACTCAGAGCTTATTATTACGCCAAGGAAGAAAAACTTCTCGTCTATGATTATCTCCCTAACGGAAGCTTGCATACTCTTCTTCATGGGAACCGTGGACCAGGAAGGATTCCGTTGGATTGGACCACGAGAATAAGCTTGGTGTTAGGGGCGGCTAGAGGGTTGGCTCGGATTCACGCGGAGTATAATGCGTCGAAGATACCTCATGGGAACGTGAGATCTTCGAACGTGCTTCTGGACAAGAACGGGGTTGCGTGCGTCTCCGACTTCGGGTTGTCGCTGCTGTTGAACCCCGTTCACGCGATTGCGAGGCTGGGTGGGTACAGGGCGCCGGAACAAGTTGAGGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGGGTTCGGAGTGCTGCTGTTGGAGGTTCTTACGGGGAGGGCCCCCGCGTCGCAGTACTCTTCTCCGATGGCGCGTGCGCGCGTGGAGGAGCAGGCTGACGTGGATCTTCCGAAGTGGGTTCGGTCGGTGGTGAAGGAGGAGTGGACCTCGGAGGTTTTCGACCGGGAGCTGCTGAGGTACAAGAACATTGAGGAGGAGTTGGTGGCGATGCTGCACGTGGGGCTGGCGTGTGTGGCGGCCCAGCCCGAGAAGAGGCCCAGTATGTTGGAGGTTGTGAAGATGATTGAGGACATCAGGGTGGAACAGTCGCCGCTGGGAGAGGATTATGATGAGTCGCGCAACTCGCTCTCGCCTTCGCTTGCCACCACCGAAGACGGGCTAGCTTAG 2046 0.5865 MKKGCPINLALALAAALCILRVAESAGQNDTHALTEFRLQTDTHGGLLTNWTGGDACAAAWRGVECSPNGRVVGLILPFLNLRGPIDSLSPLTYLRFLDLHENRLNGTVSPLLNCTSLELLYLSRNDFSGEIPPEIASLRLLLRLDISDNNIRGPIPDQLAKLTHLLTLRLQNNALSGHVPDLSSSLLNLTELNVTNNELRGHVPDPMLSKFGNASFSGNHALCGSPTLPKCPTTETEPETVTPPSVTVPSKPSSLPQTSGVAVTDNTPRKRGLSAGIIVAIVVAACVAVLVAMSFVVAHCCAGGGGSGSVVGSESGKRKSGSSSGSEKKVCGNSNSVDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLRHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHTLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVRSSNVLLDKNGVACVSDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQEADVYGFGVLLLEVLTGRAPASQYSSPMARARVEEQADVDLPKWVRSVVKEEWTSEVFDRELLRYKNIEEELVAMLHVGLACVAAQPEKRPSMLEVVKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGLA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0920 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 672 - -
Ssu4g0920 681 MobiDBLite consensus disorder prediction 230 266 - -
Ssu4g0920 681 CDD STKc_IRAK 376 651 - -
Ssu4g0920 681 MobiDBLite consensus disorder prediction 314 342 - -
Ssu4g0920 681 Gene3D Ribonuclease Inhibitor 113 234 IPR032675 -
Ssu4g0920 681 PANTHER LRR RECEPTOR-LIKE KINASE 1 672 - -
Ssu4g0920 681 MobiDBLite consensus disorder prediction 656 681 - -
Ssu4g0920 681 SUPERFAMILY Protein kinase-like (PK-like) 374 648 IPR011009 -
Ssu4g0920 681 SUPERFAMILY L domain-like 29 227 - -
Ssu4g0920 681 MobiDBLite consensus disorder prediction 229 268 - -
Ssu4g0920 681 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Ssu4g0920 681 Gene3D Transferase(Phosphotransferase) domain 1 446 669 - -
Ssu4g0920 681 ProSiteProfiles Protein kinase domain profile. 370 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0920 681 Gene3D Phosphorylase Kinase; domain 1 337 445 - -
Ssu4g0920 681 Pfam Protein kinase domain 374 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0920 681 Gene3D Ribonuclease Inhibitor 27 112 IPR032675 -
Ssu4g0920 681 MobiDBLite consensus disorder prediction 307 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0920 Ssu-Chr4 14654985 14657116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0920 28 677 Receptor kinase-like Gene Family AT2G36570 65.075 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu4g0920 Pkinase 6.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0920 - - gmx:100808402 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0920 4 14654985 14657116 Ssu4g0920 4 14654985 14657116 ECH
Ssu4g0920 4 14654985 14657116 Ssu7g2523 7 49393637 49396743 PCT