Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0910 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATTTCTCAAGGTTGATCCAGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGAGGTCACTAAGGATAAAGGAGGTGAATCAGTAGCCCTGTACGTGAAGTTTTGTAACCAGAAGCTTGTACTTGGAACGCTTTCTTCTGATAAATTTCCTCAGATATCttatgatttgatatttgagAAGGAATTTGAGCTATCCCATAACTGGAAAAATGGGAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTTGGAGTCTGATAATGATGAAGATTCTGATGattttgatgAAGATATTCCAGTTAGTGTTGCCAATGGGAAACCTGATGCACATGAAGCTAAACAGAAGGAGAAGATAGCAGAtccaagaaaaaataagaaggctAAGGAGAAGGATGCAAATGGTGAAGATGAAGATTCGTCCGAATCTGATTCTGATGAGGATTCAACTGAAGATAAGccCACAGCGAATGGTGACATAGAAAGTAGCGAAGGTGATGATGACAGCgatgaggaggaggaggaggatgaaTCTGATGAGGAGGAGACACCCAAGAAGATTGAAGCAAGCAATAAGAGGGTTGTTGACTCTTCTAAGAAAACACCCGTTCCTGTGAAGAAGGCAAAATTTGTTACTCCTCAGAAGACTGATGGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGGCTGGTAAAGCAACTGCAAATAACAAGCAGCCGGTGAAGCAGCAGACTCCAAACTCAGGTGGAGATTACAGCTGCAAGCCTTGCAGCAGGTCATTTAAGACAGAAGATGCCTTAAATTCTCATAATAGGGCCAAGCACAGCGCTAAGTGA 891 0.3951 MEFWGVEVKSGEFLKVDPGDDKIIHLSNACLGEVTKDKGGESVALYVKFCNQKLVLGTLSSDKFPQISYDLIFEKEFELSHNWKNGSVFFTGFKAQSQLESDNDEDSDDFDEDIPVSVANGKPDAHEAKQKEKIADPRKNKKAKEKDANGEDEDSSESDSDEDSTEDKPTANGDIESSEGDDDSDEEEEEDESDEEETPKKIEASNKRVVDSSKKTPVPVKKAKFVTPQKTDGKNVVHVATPHPSKQAGKATANNKQPVKQQTPNSGGDYSCKPCSRSFKTEDALNSHNRAKHSAK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0910 296 MobiDBLite consensus disorder prediction 124 151 - -
Ssu4g0910 296 Gene3D Nucleoplasmin core domain 1 99 - -
Ssu4g0910 296 Pfam C2H2-type zinc finger 270 294 - -
Ssu4g0910 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Ssu4g0910 296 MobiDBLite consensus disorder prediction 176 197 - -
Ssu4g0910 296 MobiDBLite consensus disorder prediction 198 218 - -
Ssu4g0910 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Ssu4g0910 296 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 292 - -
Ssu4g0910 296 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 292 - -
Ssu4g0910 296 MobiDBLite consensus disorder prediction 247 272 - -
Ssu4g0910 296 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Ssu4g0910 296 MobiDBLite consensus disorder prediction 99 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0910 Ssu-Chr4 14511102 14516790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0910 1 295 C2H2 Transcription Factor Family AT5G03740 41.254 7.85e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0910 NPL 1.4e-09 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0910 - - ccaj:109796568 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0910 4 14511102 14516790 Ssu4g0910 4 14511102 14516790 ECH