Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0908 ATGGAAATGCCCGCCAGAAAATCCCACTACTCCCTCCTCAGCCAAACTCCCGACGACTCTTCCTCCGGTGACGGTACAGCCAACAGGAGCAAGTTCGACAGAGCCTCTGATTGGGACTCCGTCGTCGATCACAGGCAGGGGAATCGGATCGGGCACTTGTACTCCTCGATCGGGTTGCAGCGGCAGTCTAGTGGGAGCAGTTTCGGCGAGAGCTCGCTCTCCGGCGAGTTTTACGCGCCGACTCTGTCGACCGCCGCGGCCAGTGAGATCGACGTCTTCGGCTTAGATGGATTCAAATTCGGCGAGGTCAGAGGCAGGTTTCCGGACGCCGCGGCGGCGAGGAGCGGAGGGTCCTCCGGCAAGAGCTTGGCGCAGCAGACGGAGGAGAGTTACCAGTTACAGCTGGCATTGGCTCTTCGGTTTTCCTCGGAGGCCACGTGTGCTGATGATCCCAATTTTCTGGATCCAGTGCCCGGTGAATCCGCTTCGAGGTCCTCGTCGGCGTATTCCGCAGAGGCAGTGTCGCATAGGTTTTGGGTGAATGGCTGCCTATTATACTTCAACAAAATTCCTGATGGCTTTTATCTAATTCATGGGATGGATCCCTATGTATGGACTGTGTGCACTGATCTGCGGGAAAATGGCCGAATTCCTTCAATTGAGACACTAAAATCTATAGTTCCTTCCTCTGATTCTTCACTTGAAGTAGTTTTGGTGGATCGACGTAGTGATCCCAGGTTAAAAGAACTGCAAAACAAGGTTCATGACATTTCTTGTCGCTGCATAGAAACAACAGATGTTGTAGACCAGCTTGCGAAGGTGGTTTGCAATTGTATGGGGGGTTCAGCTTCTGTATGGGAAGATGACCTTTTTCCCATATGGAGGGAGCACATTAATGATCTAAGAGATTGCTCAGGATCTGTTGTTGTTCCAATTGGCAGTCTATCAACTGGACTTTGCAGGCATCGTGCTGTGTTATTCAAAGTACTAGCTGACACCATTGATTTGCCGTGTCGAATTGCAAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGGCTTGACAGGGAATACATGGTTGATCTAATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAGGACTTAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTTGGATTGTGTGTCTGCTGAGCTCGTCTTTGATAGTGGTTCTGCAGAACAGTATGAAAGGCAGTACAGGGACAGGAACCCTGGGCCAATTCCAATTGATGACAACAGAAGTTCTCTTGTTCCTCTGCATCCACAAGCTTATCATCCCAGCACACATGATCGAGGCTCTGAAACATTTAAATCAGGTAACCCTTCTGAGAACATTGTAGAACCGACAACGACAGGCAAGGATTCATTGCCGTTAAAGCATAACCGTCCTGGTCATAGAGATACACAAACTCGACTACTGATTCCTAGCAAACCAACTAGAGAGTTTGCCCTTGATATGGAGGATTTGGATATACCATGGACTGATCTTGTTTTAAAAGGGAGAATAGGATCAGGTTCTTTTGGAACTGTACATCACGCTGAGTGGAATGGCTCGGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGCTGAACGCTTCAATGAATTCCTGAGGGAGGTTGCAATAATGAAACGCTTGCGGCATCCAAACATCGTTTTATTTATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAAACCTGGTGCCAAAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGCAACCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGtttgtgattttgggctttctCGACTAAAGGCAAATACATTTCTCTCATCCAAGTCAGCTGCTGGGActCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTTGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCAGCACAGGTTTGTTGTATAACTTTGATATATTTTAGTGtgtttatgtttagattttctATCATGATTATATTgctttga 2301 0.4585 MEMPARKSHYSLLSQTPDDSSSGDGTANRSKFDRASDWDSVVDHRQGNRIGHLYSSIGLQRQSSGSSFGESSLSGEFYAPTLSTAAASEIDVFGLDGFKFGEVRGRFPDAAAARSGGSSGKSLAQQTEESYQLQLALALRFSSEATCADDPNFLDPVPGESASRSSSAYSAEAVSHRFWVNGCLLYFNKIPDGFYLIHGMDPYVWTVCTDLRENGRIPSIETLKSIVPSSDSSLEVVLVDRRSDPRLKELQNKVHDISCRCIETTDVVDQLAKVVCNCMGGSASVWEDDLFPIWREHINDLRDCSGSVVVPIGSLSTGLCRHRAVLFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDREYMVDLIGKPGCLCEPDSLLNGPSSISFSSPLRFPGLKPAEPTIDFRSLAKQYFLDCVSAELVFDSGSAEQYERQYRDRNPGPIPIDDNRSSLVPLHPQAYHPSTHDRGSETFKSGNPSENIVEPTTTGKDSLPLKHNRPGHRDTQTRLLIPSKPTREFALDMEDLDIPWTDLVLKGRIGSGSFGTVHHAEWNGSEVAVKILMEQDFKAERFNEFLREVAIMKRLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGAKEMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPAQVCCITLIYFSVFMFRFSIMIILL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0908 766 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 112 745 - -
Ssu4g0908 766 Gene3D Phosphorylase Kinase; domain 1 529 614 - -
Ssu4g0908 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Ssu4g0908 766 MobiDBLite consensus disorder prediction 9 29 - -
Ssu4g0908 766 ProSiteProfiles Protein kinase domain profile. 536 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0908 766 MobiDBLite consensus disorder prediction 473 496 - -
Ssu4g0908 766 MobiDBLite consensus disorder prediction 464 509 - -
Ssu4g0908 766 Pfam Ethylene-responsive protein kinase Le-CTR1 171 377 - -
Ssu4g0908 766 SMART serkin_6 536 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0908 766 SUPERFAMILY Protein kinase-like (PK-like) 517 751 IPR011009 -
Ssu4g0908 766 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 112 745 - -
Ssu4g0908 766 CDD STKc_MAP3K-like 542 744 - -
Ssu4g0908 766 Pfam Protein tyrosine and serine/threonine kinase 537 745 IPR001245 GO:0004672|GO:0006468
Ssu4g0908 766 ProSitePatterns Protein kinases ATP-binding region signature. 542 563 IPR017441 GO:0005524
Ssu4g0908 766 Gene3D Transferase(Phosphotransferase) domain 1 615 751 - -
Ssu4g0908 766 MobiDBLite consensus disorder prediction 1 39 - -
Ssu4g0908 766 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672|GO:0006468
Ssu4g0908 766 PRINTS Tyrosine kinase catalytic domain signature 651 669 IPR001245 GO:0004672|GO:0006468
Ssu4g0908 766 PRINTS Tyrosine kinase catalytic domain signature 698 708 IPR001245 GO:0004672|GO:0006468
Ssu4g0908 766 PRINTS Tyrosine kinase catalytic domain signature 610 623 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0908 Ssu-Chr4 14399206 14413266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0908 1 744 MAP Kinase Kinase Kinase AT5G03730 65.057 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Ssu4g0908 PK_Tyr_Ser-Thr 1.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0908 K14510 - gmx:100787894 1290.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0908 4 14399206 14413266 Ssu4g0908 4 14399206 14413266 ECH
Ssu4g0908 4 14399206 14413266 Ssu7g2530 7 49740926 49755441 PCT