Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0907 ATGTACCCGAAACAAGAAAGTGATCCTAAACTGATACCTGACAAGAAAGCCAAAGCCCCAGAGGGACCAATTGGGTTCTCCACCACTCTCTTGCGTTCTGATGAAGCATTGCCGTCATTGTCTTTTCCACGTGACACTTCAGCATCTCTTCCAACAGGGGACACTGCCTTTTGTGGCTCTCTTCCTTCGTCCTCCTTTGAAGCATTTTCAACCATGAACCCGATGACTCCTCCGTCTCTGCCTCCTTCTCAGTTACCTTCATCAAGCACCAAGTTTGAGAAGGTAATTAGTCTGCCACAGCCGCTTGGATGCTTGCAAGGGAACCGGGTTCCGGCATTTCTATCCAAGACTTTCGACCTAGTTGACGATCCATTGCTGGATCCGATCATATCCTGGGGCTCTACCGGTGTCAGTTTCGTGGTGTGGGATCCTATCCTGTTTGCAAGACACGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTACAGTTTTGTTCGCCAGTTAAATACCTATGTGGGTACTTATGTATTTTGA 534 0.4719 MYPKQESDPKLIPDKKAKAPEGPIGFSTTLLRSDEALPSLSFPRDTSASLPTGDTAFCGSLPSSSFEAFSTMNPMTPPSLPPSQLPSSSTKFEKVISLPQPLGCLQGNRVPAFLSKTFDLVDDPLLDPIISWGSTGVSFVVWDPILFARHVLPRNFKHNNFYSFVRQLNTYVGTYVF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0907 177 PRINTS Heat shock factor (HSF) domain signature 164 176 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g0907 177 PRINTS Heat shock factor (HSF) domain signature 113 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g0907 177 PRINTS Heat shock factor (HSF) domain signature 151 163 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g0907 177 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 98 171 - -
Ssu4g0907 177 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 98 171 IPR027725 -
Ssu4g0907 177 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g0907 177 SMART hsfneu3 109 175 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g0907 177 Pfam HSF-type DNA-binding 113 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu4g0907 177 SUPERFAMILY "Winged helix" DNA-binding domain 111 171 IPR036390 -
Ssu4g0907 177 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g0907 177 Gene3D - 105 176 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0907 Ssu-Chr4 14376241 14376774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0907 98 171 HSF AT5G03720 79.730 3.36e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu4g0907 HSF_DNA-bind 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0907 K09419 - gmx:100788429 147.902