Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0905 ATGGAGAGCACGCGCAGATCCTTGGATAGATCGAGAGAACCAGGCCCAAAGAAGCCCAGATTGATCGACGAACACAGTGCCCGACAGTTACCTCAACGACAGCAAGGGTCTGGGGCAGTTACTACGTTGGCGAGGTTTCGAACAAACGACAGAGACTCCGAAAGCAGCGATTCGGGTCGCGGCAGCGGCGGCGGGGGGTACCAGCCGCAGCCTCCGCCGCAACAAGAGCTTGTGACTCAGTATAAGACCGCGCTGGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCCGGAGAGAACCAATCTGCTGCCAAGGCAATTGCTGCCACTGTGTGTGCTAACATTCTAGAGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAACATCGGCCgggattatataaaatattttgctgCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTAAATGGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCGCCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGCCTTCAGCAGTCAAGTAGGAGTAAGGGAGTAGTTAATGATATGACTGGAGCTATCTTAAACTCAAATGAGGATTTGGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGTTGGATCCTAGGCTTAACATGCATAATAATCAGCACACACACAGAGATGCATTTAATGATTCTGTTTCTGAAAAGAGCATTGGTGGATCATATGGAGGCAGTGAATATAGTTCTGGCATTTCAAGTAATTTGATCTCAGGGGCTGGAAGAACTGGAAGTAGGCTCATTGATTTAGGACACGACAAAACATGGTTCAAAACAGGTGGTGGTGATACAGAGACCATATCTGAGCAAAGAAATGGTTTCAGTCTCAAGAATAGTTTTTCAAATCATGAAGCACCGAAGTCCATGAATTTGGATGTACATCGTCAGCCAAGACAAAACATAACTAACATACAGAGCAATGTGATGTCAGGTAACTGGAAAATTTCTGAAGAAGAGGAGTTCACTTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTGTCCAGCAATTTGAGCAGAGACTCATGGATGGCCGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAGATCAGACACCCGTTTGGGGAAAAGGTTGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTTGGGGGTCATCCACCATCATCATGGCAATTGCAGAAGCACCACTCGGTTGATAAGTTGAATCTGAAGCCAGCTTACTCAGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAGCCAACGCAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCTTTTCCACCAAATGCAGTAGTAGGAATGGCCAAAATTGTGGGACAACAATTTGATTCTGGGGAAACCAAATCCCCTCCTGGGCAGTCCCCTCTGCGACAACAGTCTCCATTGCTGCCAGGAACAGTACACCACCCTCATTCAATGCATAATTTGGCTGAGCAAGAAATACCCCAGAATCTCAAAACGTCTCAAATTTTGGGAGGTCTGAGGAGTCAACACATTAAAGATCCCTCACCTACTGGTCGTCCTGTTGTTCAGGTTGGTAACTTGCGAAGATCACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGTAACTTCTTTTCGACCAAAGCTTCAGCAACAGAAGCTGGGCCCTTCTCAGACTGAAGTTAATGCTAAAACGAAGCTGCCCCAGTCTAAAATTTCTTTAGCCAGAGAAACTTCAGAACAGTCGACCACAAGTAATTTGTCAGCTGCAGCTGTCAAGAGTGGAACCATCCCCAAGAAATCAGTTAGCAGTAATCTGGATCCAAGGAATCTTCCATCAAAGTCTGGGGTTCAGCCTACTTGGTCTGGTAGGTCTTCTCCTACCACATTAATTTCTTCAGGGTCTGCAGTTGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTAGACTGCCAAAAAAACCTCAAGGAAAGGCTGGACAACCACCACAAAGGTTTTCTACTCAACCACCTGCTTCCTCTAATGTGAGCAGTTCCTCAGCTCCGAGTgccaataataataacttaaatcCAATTGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACTGACTAAGGTACCAAGTGAGGCGCAGATGGGATCCAAAGATCAAACTGAAATCATTACCACCTGTTGCTCTTTACCAGTTACATCTGTTTCTGGTTCTGCAGCTGTCCCAGCATTATCTTCCAGAGATGAGGTAGATGCTGCTACAAAAACCTCTCTTGCTTTACCTCAATCAACTAGCACGAAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCATCCACCTGTAATTAGTGAATTATTGGATGATTTCCCTCATCATTGCAAAATTTGTGGTATTAAGCTTAAACAAGAAGAACAGTTTAATAGACACTTGGAGTGGCATGCTACAAGAGAACAACATGATCTAATTAAGGCATCAAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATATTCATCTGAGTTTGAGTTGACCGACACTGTTGATGTACATGACAAAAAAACAGACAGCAGTCAATTGGATACGATGATTCTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCTGGAGAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTACTCAGATATCAATAGTGAGATGGAAAGTAGAAATGTGGGTCCCATCGTTCATGCCAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGACAATGATTAA 3102 0.4368 MESTRRSLDRSREPGPKKPRLIDEHSARQLPQRQQGSGAVTTLARFRTNDRDSESSDSGRGSGGGGYQPQPPPQQELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTGAILNSNEDLERPDRALGAARPWLDPRLNMHNNQHTHRDAFNDSVSEKSIGGSYGGSEYSSGISSNLISGAGRTGSRLIDLGHDKTWFKTGGGDTETISEQRNGFSLKNSFSNHEAPKSMNLDVHRQPRQNITNIQSNVMSGNWKISEEEEFTWDEMNSGLTDHGPNVSSNLSRDSWMADDENLEGEDHLQIRHPFGEKVDREISTVKKQLPGFGGHPPSSWQLQKHHSVDKLNLKPAYSEGFVSTLSGLPANASSLAVKKGNQSFPPNAVVGMAKIVGQQFDSGETKSPPGQSPLRQQSPLLPGTVHHPHSMHNLAEQEIPQNLKTSQILGGLRSQHIKDPSPTGRPVVQVGNLRRSQEKDMQGPLSSVTSFRPKLQQQKLGPSQTEVNAKTKLPQSKISLARETSEQSTTSNLSAAAVKSGTIPKKSVSSNLDPRNLPSKSGVQPTWSGRSSPTTLISSGSAVASPSSLDPLHNDSSRLPKKPQGKAGQPPQRFSTQPPASSNVSSSSAPSANNNNLNPIANLLSSLVAKGLISAETESLTKVPSEAQMGSKDQTEIITTCCSLPVTSVSGSAAVPALSSRDEVDAATKTSLALPQSTSTKIRNLIGFDFRPNVIREFHPPVISELLDDFPHHCKICGIKLKQEEQFNRHLEWHATREQHDLIKASRSWYAKSSDWIAGKAEYSSEFELTDTVDVHDKKTDSSQLDTMILADENQCLCVLCGELFEDVYCLERNEWMFKGAVYMNYSDINSEMESRNVGPIVHAKCLSENSIVTNLDND 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 534 562 - -
Ssu4g0905 1033 ProSitePatterns Zinc finger C2H2 type domain signature. 888 908 IPR013087 -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 1 74 - -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 534 553 - -
Ssu4g0905 1033 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1029 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ssu4g0905 1033 Pfam CID domain 82 191 IPR006569 -
Ssu4g0905 1033 CDD CID_Pcf11 78 190 - -
Ssu4g0905 1033 Gene3D - 70 198 IPR008942 -
Ssu4g0905 1033 SUPERFAMILY ENTH/VHS domain 73 201 IPR008942 -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 58 74 - -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 607 767 - -
Ssu4g0905 1033 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1029 - -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 743 767 - -
Ssu4g0905 1033 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Ssu4g0905 1033 SMART 558neu5 76 198 IPR006569 -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 28 46 - -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g0905 1033 MobiDBLite consensus disorder prediction 609 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0905 Ssu-Chr4 14349395 14355088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0905 19 413 C2H2 Transcription Factor Family AT4G04885 37.470 3.65e-57 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0905 K14400 - gmx:100788958 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0905 4 14349395 14355088 Ssu7g2534 7 49799582 49803647 PCT