Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0900 ATGGAAATGGAggaccatcatcatcatcatcatcatcatgagcagcagcagcagcagcagcagcaacagTATGGCATCACTGATCTGAGGCAACTCGTGAACGGACCGAGGTCGACCCATTTCCCCTCCATGCCGCCGCAGCCCACGGCGGAGCTGTTCCCCGCCGGCCACCAGAGCCTGGCGGCGACGCAGCACTACGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATGCCTCGCTCTCTTCATGACTTTGCCTCCAACGATTCTAGCATCGCGGTTGCCACTCCCACCACCACTAGTGCTTCCACTCCTCCGCTTAGTTGCTTAGAAGGTGAGACCGCAGGATGCATCGGTGGAGACGCATCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAGGCTAACCAAAAGGGCCCCCTATGGGATGAAGTTTCTAgGATCATGTCTGAAGAACACGGATATCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGACGGAAAGGCAGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGTAGTAGCAGCCTTCGTTTCCACACGAGCAGCCACAACCCTTCTCAAACAAATCGAGAAATGTTTCAGTCTCAGAAGCATTGTGATAGCCTCAGCCTCACCAACTCCACTGATTTGGACACGTCATCATCGGATGACAATGATCACAATAGCACTGGGGGACTCAAGGACAATGACTCCATGGAGAAGAGGAGAAAGATCAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGACGAGTGGTTGGATAAGCTCACGAAGACACTGGAACAGAAGGAAAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAATTAACAGGAAGTGAGATAAAGAGTACTCACTCTCCTGAGGGTCTAATGGTAACTGGAATTCAAAACCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTACTGCAAGAGGTGGTGAAAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGGTTATGTGGGAGGAAATAGCAACAAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTggtgttaaaagaaaaatgggaaGGTATCAGCAGCTATGCAAGGAATGCCAAGGATGGAAACAAGAAGCGCAAAGAAAACTCAAGAAGTTGTTTTTACTTCGATAACAGTGACCAATCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCACGAGACTGGGAGGCTGCAAACAAATGATGGTTCTTCTCCTTCGAATTCAAATGTTGGAAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTGATGGCTGAGGGTGGCAGTTTGTGGGAGAACTACAGCTTAAAGGTTAATAAAGCAAACCAAAACCAGTGA 1752 0.4486 MEMEDHHHHHHHHEQQQQQQQQQYGITDLRQLVNGPRSTHFPSMPPQPTAELFPAGHQSLAATQHYEMMMFGRQVADIMPRSLHDFASNDSSIAVATPTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSSSLRFHTSSHNPSQTNREMFQSQKHCDSLSLTNSTDLDTSSSDDNDHNSTGGLKDNDSMEKRRKIRVSGRSWKVKIKDFIDSQMRKLVEKQDEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALQKLTGSEIKSTHSPEGLMVTGIQNHSENQNEDGSEILNSTTARGGESWPESEITRLQQLRAEMETRYMQSGCSEEVMWEEIATKMACFGYERSALVLKEKWEGISSYARNAKDGNKKRKENSRSCFYFDNSDQSSLYNQGGAYCDINDQRHETGRLQTNDGSSPSNSNVGNAVAGDNCFPFLMAEGGSLWENYSLKVNKANQNQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0900 583 MobiDBLite consensus disorder prediction 270 294 - -
Ssu4g0900 583 Coils Coil 318 345 - -
Ssu4g0900 583 MobiDBLite consensus disorder prediction 218 269 - -
Ssu4g0900 583 PANTHER - 33 567 - -
Ssu4g0900 583 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0900 583 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 33 567 - -
Ssu4g0900 583 MobiDBLite consensus disorder prediction 405 429 - -
Ssu4g0900 583 ProSiteProfiles Myb-like domain profile. 120 185 IPR001005 -
Ssu4g0900 583 Gene3D - 427 489 - -
Ssu4g0900 583 Gene3D - 128 190 - -
Ssu4g0900 583 SMART sant 124 187 IPR001005 -
Ssu4g0900 583 SMART sant 423 486 IPR001005 -
Ssu4g0900 583 CDD GT1 427 491 - -
Ssu4g0900 583 Pfam Myb/SANT-like DNA-binding domain 127 213 IPR044822 -
Ssu4g0900 583 Pfam Myb/SANT-like DNA-binding domain 426 511 IPR044822 -
Ssu4g0900 583 MobiDBLite consensus disorder prediction 218 294 - -
Ssu4g0900 583 CDD GT1 127 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0900 Ssu-Chr4 14257074 14259666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0900 18 578 Trihelix Transcription Factor Family AT5G03680 46.346 3.23e-147 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu4g0900 Myb_DNA-bind_4 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0900 - - gmx:100813245 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0900 4 14257074 14259666 Ssu4g0900 4 14257074 14259666 ECH
Ssu4g0900 4 14257074 14259666 Ssu7g2538 7 49846653 49847936 PCT