Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0898 ATGTGTAGTCTAGCTCAAGCATTGATATGCCTGCAGGCTTTATTTTATAAGACAACAAACGGACTTGCAGCATATACATATAGCATagtaaaaagttattatacaGAAAACGCTCTCCAACTCCAACCCAGTTATCCAACACCACCAGGCTGGCTTACACCCGAATCCTTCACACACCGTAGTTCAGCAACAACTGGTTTGCACTTCCATCTCAGAACTCCTTCTCCAGCAACCGCAATTCTGACCCCAATAAATGGCTTCCCTCAACTGCCAACTGCCATCACTCACCTTCACCTTCAACTGCCAACTGCCAACACCCAAGTTCCAATTCCTCACATCATCACCACCATGCGTTCCAGCAACGGTAGTAACACTTGCGCCGCTGCATCCAGCAGCAGAGCCTCCAACGGCAACACGGGGCGCCACCCTGTGTACCGCGGAGTGAGGCGCAGGAGTAGTGGAAAATGGGTTTCTGAAATCCGCGAGCCCAAAAAGCCCAACAGGATTTGGCTGGGGACGTTTGCCACCCCTGAAATGGCCGCTATAGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGTAAGGACGCTGAACTCAACTTCCCAAACTCGGCTTCTTCTCTGCCCGTCCCTGCTTCATCCGCTGCTCGCGACATTCAGACGGCTGCGGCTGGTGCCGCAGCCGCCGTCGGAGCAGCGAATGATGCACTCGAGAGAAGCCGAGGAGGGAACGTTTCGGTTTCACTGGGGCAAGACTTTTCAGGCGGAGATTTAAACCACTTTGTGGATGAGGACTTGATCTTTGATATGCCGAATATTCTGGTCAATATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACATTGCTGCTAACGACTATGAATACATGGATGAAGACCCCAACCTCTGGGGTTTCCCTAATTACTACCCTTAA 936 0.5075 MCSLAQALICLQALFYKTTNGLAAYTYSIVKSYYTENALQLQPSYPTPPGWLTPESFTHRSSATTGLHFHLRTPSPATAILTPINGFPQLPTAITHLHLQLPTANTQVPIPHIITTMRSSNGSNTCAAASSSRASNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSAARDIQTAAAGAAAAVGAANDALERSRGGNVSVSLGQDFSGGDLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDIAANDYEYMDEDPNLWGFPNYYP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0898 311 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 Gene3D AP2/ERF domain 144 202 IPR036955 GO:0003700|GO:0006355
Ssu4g0898 311 MobiDBLite consensus disorder prediction 124 139 - -
Ssu4g0898 311 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 MobiDBLite consensus disorder prediction 124 145 - -
Ssu4g0898 311 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 CDD AP2 145 203 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 SUPERFAMILY DNA-binding domain 144 203 IPR016177 GO:0003677
Ssu4g0898 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 123 307 - -
Ssu4g0898 311 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Ssu4g0898 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 123 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0898 Ssu-Chr4 14189959 14191500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0898 135 307 AP2-EREBP Transcription Factor Family AT2G36450 61.667 1.82e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g0898 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0898 - - gmx:100813781 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0898 4 14189959 14191500 Ssu4g0898 4 14189959 14191500 ECH
Ssu4g0898 4 14189959 14191500 Ssu7g2541 7 49907287 49908209 PCT
Ssu7g2542 7 49971672 49972181 Ssu4g0898 4 14189959 14191500 PCT