Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0894 ATGGCTCAGAAGTACTTACACGAGCTACTtgaggaggatcaagagccgtTCCTTCTAAACAAGTACATTTCCGACAGGCGGAGCCAGATGAAAGGCCCTTCCCCGAAGACAAGCTTGCAGGTGAAGAAACGGAAACCAACGAACCCAAACGCAAACTTCCCGGGGAATCTTTGCAAAAACGCTTGTCTTTTTTCCCTGACGGACACCCCAGACCTGAGAAAATCTCCACTATTCGAATTGGCGTCCCCGGCCAAAAGCCCCTGCAAATCACCCAACGCCATTTTCCTTCACATCCCTTCTAGAACCGCGGCTCTCCTTCTAGAAGCCGCGCTCAGGATCCAGAAACACTCGTCACCCGCTTCCCGGCCCAAAACTAAGGCCCAATCCTTCGGCCTCTTGGGCTCCCTCTACAAGAGACTCACGCAACGAAACCATAACCGCAGGAAAGAAATACAGGGCGGAGGCGTTAAGGTCTCCGTGAAGGATACTTTGAGGTGGGATTCCTCTGTTGGGCGAAGAAAAAAAGTTTCCAAAGCCAACAAGGAGACGGTGAATGTGAATGTGAATGTGAATGCGTGTTCTTACAATGGTAGGGCTAGTAGTGCTGTTTGGTCAGAGAGCAATGAAGATAAATCTCTCGACATGGAAACCTCGAGTAGTGGCTACTCCGAAGAGGTTCACTTCGTAACCAATCACAAACACTCTCCGTGCTTCTGCGAAAGCCCTTTCCGTTTTGTTCTTCAAACGAGTTCTCCTTCCTCCGGCCACCACACGCCGGAGCTTCCTTCGCCGAGCCGCCACGCAACTGAGGACAAAGAAAGTAATGAAGCTGAGAGTCTCAACAAATTCCAGACAcaggaagaagaggaggaagataAGGAACAGTGCAGTCCAGTGTGTGTGTTAGACCCACCCTTTGAGGACGATGACGAAGGGCATGGAAACGGCgatgaggaggaggaggagggtgGTTTTGATTTGGAGTGCAGCTTTGAGATTGTACAGAGAGCCAAGCAGCAGTTATTGTACAAGCTACGTAGATTTGAGAAACTGGCAGAGTTGGATCCAGTAGAACTTGAGAAAAAAATGCAGGATCAAGAAGAGGACGAGTATGAAGCATTTATGGAGGAGGAAGATGGTGAAGATGAGGACAACGAAGCATCATATAAAGAAAATGACTTTAGAGAACTAATTTTCCAAGCTCTGTGCCAGTCATGGGTCCATGACAGACAGCAAATCCCAGAGGACTTTAAGAAGCTGGTTTCTGATCTCATTatggaagaggagagagaacTTAATTCCTTGGAAGATAGGGACATGGTGATAAGACGGGTATGCAAGAGGCTGGAATTGTGGAAAGAAGTGGAGTCTAACACAATTGATATGATGATAGAAGATGACTTCTCTAGAGATGATGGTGGGTGGAAGAAAAATATAGAGCAGATAAGAAATATGGCTGGGGAGCTTGAACTTGCCATCTTTGGCTTTCTGGTGGAGGAATTTTCAGAGGAACTAGTATGTTAA 1524 0.4462 MAQKYLHELLEEDQEPFLLNKYISDRRSQMKGPSPKTSLQVKKRKPTNPNANFPGNLCKNACLFSLTDTPDLRKSPLFELASPAKSPCKSPNAIFLHIPSRTAALLLEAALRIQKHSSPASRPKTKAQSFGLLGSLYKRLTQRNHNRRKEIQGGGVKVSVKDTLRWDSSVGRRKKVSKANKETVNVNVNVNACSYNGRASSAVWSESNEDKSLDMETSSSGYSEEVHFVTNHKHSPCFCESPFRFVLQTSSPSSGHHTPELPSPSRHATEDKESNEAESLNKFQTQEEEEEDKEQCSPVCVLDPPFEDDDEGHGNGDEEEEEGGFDLECSFEIVQRAKQQLLYKLRRFEKLAELDPVELEKKMQDQEEDEYEAFMEEEDGEDEDNEASYKENDFRELIFQALCQSWVHDRQQIPEDFKKLVSDLIMEEERELNSLEDRDMVIRRVCKRLELWKEVESNTIDMMIEDDFSRDDGGWKKNIEQIRNMAGELELAIFGFLVEEFSEELVC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0894 507 PANTHER OS04G0572500 PROTEIN 1 507 - -
Ssu4g0894 507 MobiDBLite consensus disorder prediction 263 289 - -
Ssu4g0894 507 MobiDBLite consensus disorder prediction 30 52 - -
Ssu4g0894 507 MobiDBLite consensus disorder prediction 250 323 - -
Ssu4g0894 507 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1B-LIKE PROTEIN 1 507 - -
Ssu4g0894 507 Coils Coil 418 438 - -
Ssu4g0894 507 MobiDBLite consensus disorder prediction 25 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0894 Ssu-Chr4 14134177 14137360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0894 3 506 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 37.984 3.97e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0894 - - gmx:100790018 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0894 4 14134177 14137360 Ssu4g0894 4 14134177 14137360 ECH
Ssu4g0894 4 14134177 14137360 Ssu7g2543 7 50005500 50009543 PCT