Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0892 atGGACTTCCACCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCGCTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTACCACTAACAGATTTCccaGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTATATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTtTGTTGCAATCAGGGTATTGGGGCAGAGGGGCCATGGATCCGGAGCCAGGGCGGTGCCGGAGAACTGACGGCAAAAAGTGGCGGTGTTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAAAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTacttgtggtggtggtggatctCTAGGACTCAGTGCTTCATCTTCCATTTCTTCGCCGCTAGCTACTGCTTCACTCAAATCCCCATTTGATCTTCTTCACCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGCCATATGCTGAGGCATTTCTTTGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCAGGCCGGATGAACTCGGCCACATGTCTCTCTATTTCCATGCCCGGAAATACTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGAACCTGGCCCAAGAAATGAGAATGTGGACCACGAGGCGGAGGCAGAGCAACTGCAGTTGAATTGGGCCGGAGGGTGGGCCTCGGCTAATCAAGTGGCTTCAATGGGGGGCCCACTTGCCGAGGCACTCAGATCATCTACTTCAAATTCGTCTCCGACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCCGAGACCAGCTTCATTAGCACCTAA 1146 0.4887 MDFHLKQWRNQHESEEQHSTKMPKLLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLATTNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGKNRSRKPVELPTPTSTCGGGGSLGLSASSSISSPLATASLKSPFDLLHLNERSSGTKNEDKSLFENEDHVGGDGRSGGHMLRHFFDDWPRSLQDSDNVENNAGRMNSATCLSISMPGNTSSDVSLKLSTGYGEEPGPRNENVDHEAEAEQLQLNWAGGWASANQVASMGGPLAEALRSSTSNSSPTSVLHHLPRGSGSETSFIST 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0892 381 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu4g0892 381 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu4g0892 381 Pfam WRC 143 185 IPR014977 -
Ssu4g0892 381 PANTHER GROWTH-REGULATING FACTOR 3 11 381 - -
Ssu4g0892 381 MobiDBLite consensus disorder prediction 174 195 - -
Ssu4g0892 381 MobiDBLite consensus disorder prediction 298 321 - -
Ssu4g0892 381 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g0892 381 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu4g0892 381 MobiDBLite consensus disorder prediction 351 381 - -
Ssu4g0892 381 PANTHER - 11 381 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu4g0892 381 ProSiteProfiles WRC domain profile. 142 186 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0892 Ssu-Chr4 14013241 14016041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0892 1 368 GRF Transcription Factor Family AT3G52910 51.531 1.52e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu4g0892 WRC 9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0892 - - gmx:100814842 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0892 4 14013241 14016041 Ssu4g0892 4 14013241 14016041 ECH
Ssu4g0892 4 14013241 14016041 Ssu7g2544 7 50072867 50075361 PCT